Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01161 ATGGCAGAGACTGAGGATATTCAGCCACTCGTCTGCGACAATGGAACAGGAATGGTCAAGGCTGGATTTGCTGGTGATGATGCTCCAAGAGCCGTGTTTCCTAGCATTGTTGGCCGCCCCCGTCATACTGGTGTGATGGTTGGTATGGGCCAGAAGGATGCATATGTAGGTGATGAGGCTCAGTCCAAGCGTGGTATTTTAACTCTGAAATATCCCATTGAGCACGGTATCGTAAGCAATTGGGATGATATGGAGAAGATTTGGCATCATACCTTCTACAACGAGCTTCGTGTGGCCCCGGAGGAGCACCCTGTTCTGCTTACAGAAGCACCTCTTAACCCAAAGGCTAACCGTGAGAAAATGACTCAAATTATGTTCGAGACCTTCAACACTCCTGCTATGTATGTTGCCATTCAGGCTGTTCTGTCACTCTATGCCAGTGGTCGTACGACTGATGTGGATTGCGAAGGCGGAGTATGA 480 0.4896 MAETEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTDVDCEGGV* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01161 159 Pfam Actin 5 153 IPR004000 -
Pte6g01161 159 FunFam Actin, alpha skeletal muscle 3 152 - -
Pte6g01161 159 CDD NBD_sugar-kinase_HSP70_actin 10 159 - -
Pte6g01161 159 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Pte6g01161 159 PANTHER ACTIN 9 152 IPR004000 -
Pte6g01161 159 SUPERFAMILY Actin-like ATPase domain 5 148 IPR043129 -
Pte6g01161 159 Gene3D - 4 153 - -
Pte6g01161 159 Gene3D Actin; Chain A, domain 2 36 73 - -
Pte6g01161 159 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Pte6g01161 159 SMART actin_3 7 159 IPR004000 -
Pte6g01161 159 FunFam Actin, alpha skeletal muscle 36 73 - -
Pte6g01161 159 PRINTS Actin signature 28 37 IPR004000 -
Pte6g01161 159 PRINTS Actin signature 51 62 IPR004000 -
Pte6g01161 159 PRINTS Actin signature 142 159 IPR004000 -
Pte6g01161 159 PRINTS Actin signature 117 130 IPR004000 -
Pte6g01161 159 PRINTS Actin signature 63 85 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01161 Pte-Chr6 29762246 29765428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01161 1 158 Cytoskeleton Gene Families AT3G12110 94.937 7.01e-111 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01161 K10355 - qsu:112001967 314.694