Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01144 ATGAACCCAAATTTTTCATCGACGACGATAGGGTCTTACTGGTGTTACAGATGCTCTCGCTTCATTCGTGTGTGGGTCAACCCGGACGAACCAGCTTGCCCAAATTGCAACAGTGGTTTCATCCAAGAGATTGAGATCAACCCATCATCGGTAACGCATAGGAGTCCATTTCCACCGCACTCAACTTCTATGCTCGGAGATGGAGCTCATGATTTGTACAGTAATAATATAAGGAGCCAGAGTGCAACGAGACGACGACGACACACCGTGGAGCGCTCTCCGTTTAGCCCGGTCATTGTTTTCCGGGGACCCGTTGATCTCGGCGGTGTGGATGACAGTGTAGAAGGTGACAGGAGTAGCTTTGACTTTTATTATGGCGATGGCGATGGCACTGTGCTCCGACAACTTCCGGAGACTGTATCTGAGTTCTTAACGGGTTCAGGTTTTGATCGGTTGCTGGAGCAGCTGTCCCAGTTCGAGATAAATGGGTTGGGAAGGGAGGAAATTCCGCCGGCGTTTAAAGCGGCAGTCGAGTCCATGCCCACGATTGAGATTGCCGAAACCCACGTGTGTTCGGACGCACACTGTGCCGTTTGTACAGAACCGTTTGAACTTGGCTCCGAGGCTCGTGTAATGCCTTGCAAGCATATCTATCACTCGGATTGCATCCTTCCATGGCTGTCTCTGAGGAATTCATGCCCTGTTTGCCGCCATGAATTGCCTGTAGATGGAATTCTGATGGAAACCCCGACAATTAGACAATCGCGAGCAGGTGCAGAAGATGAGGCAATGGGTTTAACCATCTGGAGATTATCTGGTGGTGGCTTTGCATTGGGAAGATTTTCTGGTGGTCGAAGAGCCGGTGAGACGGAGCTACCCCCTTTCTTCACAGAAATAGATGGTGGGTTCAACTCAGATGGGGCTCCGAGAAGGTTTTCACTGACACCCAGAAACAGCAGCATGAGAGAAGGTCGTGGCATTGGGGGAATCTTCCGCAATTTCTTCTCCTTCGTTAGAAGGTTAAGACCTAGCTCAACCTCATCTTCGTCATCCAATTCAAGCTCGGAGTTTAGGTCTATAAGCACAAGTTACAGTCATGCCAACTCAGTTTTCAATAGGATGAGTAACTCGCGAAGTCGCACTAGAGCATGGGTCTTAGATGATTGA 1167 0.4953 MNPNFSSTTIGSYWCYRCSRFIRVWVNPDEPACPNCNSGFIQEIEINPSSVTHRSPFPPHSTSMLGDGAHDLYSNNIRSQSATRRRRHTVERSPFSPVIVFRGPVDLGGVDDSVEGDRSSFDFYYGDGDGTVLRQLPETVSEFLTGSGFDRLLEQLSQFEINGLGREEIPPAFKAAVESMPTIEIAETHVCSDAHCAVCTEPFELGSEARVMPCKHIYHSDCILPWLSLRNSCPVCRHELPVDGILMETPTIRQSRAGAEDEAMGLTIWRLSGGGFALGRFSGGRRAGETELPPFFTEIDGGFNSDGAPRRFSLTPRNSSMREGRGIGGIFRNFFSFVRRLRPSSTSSSSSNSSSEFRSISTSYSHANSVFNRMSNSRSRTRAWVLDD* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01144 388 CDD RING-H2_RNF181 196 240 - -
Pte6g01144 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 243 IPR013083 -
Pte6g01144 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 73 241 - -
Pte6g01144 388 SMART ring_2 196 236 IPR001841 -
Pte6g01144 388 Pfam Ring finger domain 195 237 IPR001841 -
Pte6g01144 388 Pfam zinc-ribbon 12 44 IPR039525 GO:0061630
Pte6g01144 388 Pfam Protein of unknown function (DUF1117) 264 375 IPR010543 -
Pte6g01144 388 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
Pte6g01144 388 FunFam E3 ubiquitin-protein ligase RING1-like 158 243 - -
Pte6g01144 388 SUPERFAMILY RING/U-box 176 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01144 Pte-Chr6 29569280 29570806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01144 140 243 C3H Transcription Factor Family AT5G01980 48.077 1.80e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01144 K11982 - vvi:100265659 410.223