Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01130 ATGAGTTGGAACCCTCATATGGAGGTTCATTACATTAACACCAGCTATCCTTATAACACTGCTGGAAGCTTTATGGAATACGTTGAAGGCCTTACCTATGAACATGTGAATTTCATTTTTTCCGGTGCTTCTCATGTTCAGGATAGTGTGTACCCATCACCCTCTGCAGGCTTTTACAAATTTGGGTCAACTGAGCCAGTGACCTCGCCTTATTATGACCATAATTATGATTATCATGTAACTAATGAAGTGCGATTAGATGAATATAGAAGGCCTTTAGAGAATTCATCTGCAGTGATTGGTGAACAGATAGTGACTGTAAGTTCTGAATGGGAGGGTGCTGCAAATACAACCACAGGGGGCAGTTATATTGAATGCCCTCGGAGACGTAGCAATTCTCATGATTATCAGGTCATTTGGCAAGATAACATCGACCCTGACAATATGACTTATGAGGAATTGCTGGAGTTAGGCGAGGCTGTTGGAACACAAAGCCGCGGCCTTTCTCAAGAACTTATCTCTTTGCTTCCAATCTCAAAGTATAAATGTGGAATATTCTCAAGGAAAAGATCACGGAATGAAAGATGTGTGATTTGCCAGATGGAGTATAAACGTGGTGACAAGCGGATCACTCTCCCTTGCAAACATGTCTACCATGCTAGTTGCGGTAGCAAATGGCTTAGCATCAATAAGGCTTGCCCTATCTGTTACACTGAGGTGTTTGCTGACATATCAAAATGCAATAATCGCGGATCATCATCAAATTGA 768 0.4167 MSWNPHMEVHYINTSYPYNTAGSFMEYVEGLTYEHVNFIFSGASHVQDSVYPSPSAGFYKFGSTEPVTSPYYDHNYDYHVTNEVRLDEYRRPLENSSAVIGEQIVTVSSEWEGAANTTTGGSYIECPRRRSNSHDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLSQELISLLPISKYKCGIFSRKRSRNERCVICQMEYKRGDKRITLPCKHVYHASCGSKWLSINKACPICYTEVFADISKCNNRGSSSN* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01130 255 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 241 IPR033276 GO:0004842|GO:0016567|GO:0046621
Pte6g01130 255 Pfam Ring finger domain 195 236 IPR001841 -
Pte6g01130 255 SUPERFAMILY RING/U-box 195 244 - -
Pte6g01130 255 ProSiteProfiles Zinc finger RING-type profile. 196 236 IPR001841 -
Pte6g01130 255 FunFam E3 ubiquitin ligase BIG BROTHER 158 241 - -
Pte6g01130 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 242 IPR013083 -
Pte6g01130 255 SMART ring_2 196 236 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01130 Pte-Chr6 29351040 29355035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01130 5 245 C3H Transcription Factor Family AT3G63530 43.580 2.73e-62 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01130 K19045 - cave:132164722 417.542