Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01122 ATGGGCTCTATGAACTCAAACAACTGGCTTTCTTTCCCTCTGTCTCCTACTCATCCCTCCTTACCCGTACATCTTCAAGCAACTCAGTCCCATCATTTCTCCCTGGGTTTAGTTAATGATAATTTGGAAAACCCGTTTCAACATCCTGAGTGGAACATATCCAGTGCTCCAGGAGACAGTGATGTTCCAAAAGTTGCTGATTTTCTTGGCGTGAGCAAATCAGAGAATCAGTCAGAACTTGCAGCCTTCAATGAAATTCAACCTCATGATTCTGACTACCTGTTTTCAAACACCAGTTTGGTGCCGGTACAAAACTCCCCGGTTGCTACATTTGGTAGCTACGAGTTTCAAGAAAATGCTAGCAGTAATATACAATCATTGACATTATCTGTGGGCAGTGGTAAAGGTTCTACTTGTGAAACTAGTGATAATACTAGTACAAATACTGTGGAAGCTGCACCGAGACGGACTTTGGACACCTTTGGCCAAAGAACATCAATATATCGTGGCGTAACAAGACATAGATGGACGGGTAGGTATGAGGCTCATCTTTGGGACAACAGTTGCAGAAGAGAAGGTCAATCCAGAAAAGGTCGCCAAGGTGGCTATGACAAGGAGGACAAAGCAGCCAGAGCTTATGACCTTGCTGCCCTCAAGTATTGGGGGCCATCCACAACTACCAATTTTCCTGTAAGTAACTACGAGAAGGAACTGGAGGAAATGAAGCATATGACTAGACAAGAGTTTGTAGCTGCCATCAGAAGGAAGAGCAGCGGTTTCTCTAGAGGTGCTTCAATGTATCGTGGAGTCACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCAGGAAACAAGGATCTTTATTTGGGAACTTTCAGTACTGAAGAGGAAGCTGCAGAAGCGTATGACATAGCTGCAATTAAATTTAGAGGACTGAATGCGGTGACCAACTTCGACATGAATCGTTATGATGTGAAGAGTATCCTTGAAAGCAACACGCTACCAATTGGTGGAGGAGCTGCTAAACGGCTAAAGGAAGCTCAAGCTCTCGAATCTTCGAGAAAACGCGAAGAAATGATTGCCCTCAGTACAAACTTCCAGTACGGAGGCTCTAGCTCGAATAGACTAGAAGGATATTCTCTCATGCAACATCAGTTTGAGCAGTCTCTGCCTCTCCTTACCCTCGGTCAAGAGATCACTCCATATTCCCATGACCCTTCGTTTAACCATAATAGCTACATTCAAACGCAGCTACAGCTGCACCAGCACAGCACTGGCACTAATTATCTGCACCAACCGACCCACAATGCGCAACTGTACAACAATTACCTTCATACTCATCCAGCTTTGATTCAAGGATTAATGAACAACGGTTCTTGTTCTTCTTCTTTGGTAGAAAATAATGGGAGCTCCAGTGAGAGTAACTACAACGGTTGTGCACTTTGGGGGAACAGTCTTGGGGTGGTGGCTTCAAATTCGTCAGCTTGTACTGGTAATGGAGAGGAACTTGCGATGGTTAAGGTTGATTACGACATGCCTTCCGGGGGTTATGGCGGCTGGTCGGGTGACTCAGTGCAAGGTTCAAATGCTGGTGGTGTTTACACAATGTGGAATGAGTAA 1635 0.4508 MGSMNSNNWLSFPLSPTHPSLPVHLQATQSHHFSLGLVNDNLENPFQHPEWNISSAPGDSDVPKVADFLGVSKSENQSELAAFNEIQPHDSDYLFSNTSLVPVQNSPVATFGSYEFQENASSNIQSLTLSVGSGKGSTCETSDNTSTNTVEAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGPSTTTNFPVSNYEKELEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKSILESNTLPIGGGAAKRLKEAQALESSRKREEMIALSTNFQYGGSSSNRLEGYSLMQHQFEQSLPLLTLGQEITPYSHDPSFNHNSYIQTQLQLHQHSTGTNYLHQPTHNAQLYNNYLHTHPALIQGLMNNGSCSSSLVENNGSSSESNYNGCALWGNSLGVVASNSSACTGNGEELAMVKVDYDMPSGGYGGWSGDSVQGSNAGGVYTMWNE* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01122 544 SUPERFAMILY DNA-binding domain 166 232 IPR016177 GO:0003677
Pte6g01122 544 CDD AP2 265 324 IPR001471 GO:0003700|GO:0006355
Pte6g01122 544 ProSiteProfiles AP2/ERF domain profile. 167 230 IPR001471 GO:0003700|GO:0006355
Pte6g01122 544 PRINTS Ethylene responsive element binding protein signature 168 179 IPR001471 GO:0003700|GO:0006355
Pte6g01122 544 PRINTS Ethylene responsive element binding protein signature 306 326 IPR001471 GO:0003700|GO:0006355
Pte6g01122 544 Pfam AP2 domain 167 222 IPR001471 GO:0003700|GO:0006355
Pte6g01122 544 Pfam AP2 domain 267 316 IPR001471 GO:0003700|GO:0006355
Pte6g01122 544 SUPERFAMILY DNA-binding domain 265 325 IPR016177 GO:0003677
Pte6g01122 544 FunFam AP2-like ethylene-responsive transcription factor ANT 166 232 - -
Pte6g01122 544 ProSiteProfiles AP2/ERF domain profile. 266 324 IPR001471 GO:0003700|GO:0006355
Pte6g01122 544 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 68 417 - -
Pte6g01122 544 CDD AP2 166 232 IPR001471 GO:0003700|GO:0006355
Pte6g01122 544 SMART rav1_2 167 236 IPR001471 GO:0003700|GO:0006355
Pte6g01122 544 SMART rav1_2 266 330 IPR001471 GO:0003700|GO:0006355
Pte6g01122 544 FunFam AP2-like ethylene-responsive transcription factor 265 326 - -
Pte6g01122 544 Gene3D AP2/ERF domain 167 232 IPR036955 GO:0003700|GO:0006355
Pte6g01122 544 Gene3D AP2/ERF domain 266 326 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01122 Pte-Chr6 29304402 29307087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01122 4 545 AP2-EREBP Transcription Factor Family AT1G51190 62.312 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pte6g01122 AP2 6.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01122 K09285 - qsu:112019105 823.157