Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01116 ATGGAGTCGCATCTTCAGCAACATCACTATATTACCCATCATCAGCAGCTTCAGCGCAACCAGCCCCACACGAATTCTGGGTTGACGCGTTACCGGTCAGCTCCAAGTTCATATTTCACAAATATTCTTGACAGGGAGTTCTGCAATCGATTTTTCGATCGCCCTGCAAGTCCTGAAACGGAGAGAATATTTACAGGGTTTGTGAATACTGATGATGTTTCTGCTGTAGAGGATCCCTTCTCTCAAAGTATTTCACCTGTAAGTCAAAATTCATTGGTGAAAGAAAAGATTAGCCAGGATATCAGTCAGGTGGCACCATCCATGAATAATAACGCAGTGATTATTCATCAGCAGCAGCAGCAGCAAAGGAGCAATATCAGTAGCTATGCATCTACCCCACAAGGCTTTCACCGAAGTTCATCCAAACCTCCATTGCCAAATCCTAGCCTAAGTTCAGCCATGGAAGCAGCTTATTCAGTTGGACAAGCTCGGGTTCCGCATATGAAGACTGGTGTTGTCAAGCTTTCCAATCTTATCCGGCACAATAGTTCACCAATTGGATTGTTCTCCCAGATAAAAGTTGACGATGGCCACGTTGCTAGACGAGGCGGATGGAATTTGGGAGCTGGAATTGACACTCATGAAGAAGCCTCTTTTTCAACTTCGAGCGGGTTGAAGAATTCAATGAATTACTCATCAGGGTTGACGTCACCTATTGCTCAAGTTGGAGTCAAAAGCAATGAAGTTAATAGTAAAGACAATGAAGGTTACTGGGATGATTCTGCAATCTTGTCTGACAACATGGGTGGACTAAAGCGATTTAGAGACGACGAAGGACAGGAACAGTCTGGTTTATTAAATTCATCAGTTGAAACACAGAAACATGCTCGAACACAACCTCCGCCTTTGGCTCATCACTTGAGTTTGCCAAAAACTAAAGCAGAAATGGCAGGCATTGAGAAATTTCTGGAGTTATCAGACTCTGTGCCCTGCAGAATTCGTGCCAAGCGTGGTTTTGCAACGCATCCCAGAAGCATTGCAGAGAGGGTGAGAAGAACTAAAATCAGTGAGCGGATCAGGAGACTACAAGAGCTTGTTCCAAACATGGAGAGGCAAACAAACACTGCAGACATGTTAGACTTGGCCGTAGATTACATCAAACATCTTCAAAGACAGGTTCAGGTATGA 1188 0.4411 MESHLQQHHYITHHQQLQRNQPHTNSGLTRYRSAPSSYFTNILDREFCNRFFDRPASPETERIFTGFVNTDDVSAVEDPFSQSISPVSQNSLVKEKISQDISQVAPSMNNNAVIIHQQQQQQRSNISSYASTPQGFHRSSSKPPLPNPSLSSAMEAAYSVGQARVPHMKTGVVKLSNLIRHNSSPIGLFSQIKVDDGHVARRGGWNLGAGIDTHEEASFSTSSGLKNSMNYSSGLTSPIAQVGVKSNEVNSKDNEGYWDDSAILSDNMGGLKRFRDDEGQEQSGLLNSSVETQKHARTQPPPLAHHLSLPKTKAEMAGIEKFLELSDSVPCRIRAKRGFATHPRSIAERVRRTKISERIRRLQELVPNMERQTNTADMLDLAVDYIKHLQRQVQV* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01116 395 CDD bHLH_AtbHLH_like 344 395 IPR045239 -
Pte6g01116 395 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 389 IPR011598 GO:0046983
Pte6g01116 395 MobiDBLite consensus disorder prediction 117 150 - -
Pte6g01116 395 Pfam Helix-loop-helix DNA-binding domain 344 390 IPR011598 GO:0046983
Pte6g01116 395 SMART finulus 345 395 IPR011598 GO:0046983
Pte6g01116 395 MobiDBLite consensus disorder prediction 10 28 - -
Pte6g01116 395 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 394 IPR036638 GO:0046983
Pte6g01116 395 Gene3D - 335 395 IPR036638 GO:0046983
Pte6g01116 395 MobiDBLite consensus disorder prediction 1 28 - -
Pte6g01116 395 Coils Coil 352 372 - -
Pte6g01116 395 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 35 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01116 Pte-Chr6 29209876 29213390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01116 1 395 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 39.951 1.64e-73 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte6g01116 HLH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01116 - - qsa:O6P43_028130 423.32