Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01111 ATGTGTGCTAATGGCCTTTGTTTTCATTGCCATGCGACATTCCATGCTGGACACCACCGCCAATCTCAATTAATTTTATGGGTGCTGGATGAGCCTGAACCACCGGATCCCATTTCCCCTTTGCAGGGACTTGTCACAAGTTCTCATAATGCTGTTTTGGTCATCCAACACCATGAAGAGCCGAAGCCATTGAAGAGTGTGGATGGGCCTGAGATCTGTGAAATATGTGGCGATGATGTGGATCTCACCGTGGATGGAGAAATATTTGTGACCTATGATGAGTGTGGATTCCCATTTTGTAGACCATGCTATGAGTATGAGAGAAGAGAAGGCAGCCAGCTTAGCAACCCACAGTGCAAGACAAGATACAAGCGCATCAAAGTGAGCCCAAAAGTTGTTGGAGACAAAGATGAAGAGAATGTGGATGATATTGAACACAAATTCAAGATGCAGGATGAGCAGGACCTGCAGAAGCTTTTCTGCATATGA 489 0.454 MCANGLCFHCHATFHAGHHRQSQLILWVLDEPEPPDPISPLQGLVTSSHNAVLVIQHHEEPKPLKSVDGPEICEICGDDVDLTVDGEIFVTYDECGFPFCRPCYEYERREGSQLSNPQCKTRYKRIKVSPKVVGDKDEENVDDIEHKFKMQDEQDLQKLFCI* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01111 162 SUPERFAMILY RING/U-box 58 142 - -
Pte6g01111 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 147 IPR013083 -
Pte6g01111 162 Pfam Zinc-binding RING-finger 62 141 IPR027934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01111 Pte-Chr6 29164154 29164642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01111 43 158 Cell Wall Biosynthesis AT5G17420 62.712 4.27e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01111 K10999 - cpap:110815766 172.17