LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte6g01095	ATGGGTTGCATTCACTCAAAGCGTGCGTCCAGGAAATCTTCACGTTTACAACGTTCACGTTCACGCTCACGTTCACATTCGCCTGCTCCGTATATTTATTCTGTCGCTTCTGTGGCAGACAGAGACAATAATATCAATTTGATTTTGGAGCCTGAGGCTCATTCTGGGATATTGATTCTTGAGAACAAAGGGGATGGGAAATCCACATCGTCAGCAGAGGACAAGAGTCGAGAGGCAAAGAGGAAATCAAAGACTAGTTCGAGTACCAAAGCCTCTTTCGGTTTAAAACTTGGACTTTCAGTTAGGCACACCCAAGCAGAGCAGAACGCAGCTGGCTGGCCCTCTTGGCTAACTTCTGTAGCCAGCGAAGCTATCCATGGCTGGGTACCCCTTCGTGCAGATGCCTATGAGAAATTGGAGAAGGTTGGGCAAGGTACATACAGCAGTGTATTCCGAGCACGTGAAGTTGAGACAGGGAGAATGGTTGCCTTGAAGAAGGTCCGGTTTGATACATTTCAACCGGAAAGCATCAGGTTCATGGCAAGGGAAATAACCATTCTGCGCAGACTTGATCACCCTAATGTTATGAAATTGGAGGGTCTCATCACGTCCCGGTTATCAAACAGCATATACTTTGTATTTGACTACATGGAACATGACCTTGCCGGCCTAGTATCCAATCCTGAGATCACGTTCACTGAATCCCAGGTGAAATGTTACATGAGGCAGCTACTGAGTGGGATTGAACACTGCCACCTGAGAGGTATAATGCACCGAGACATCAAGACCTCAAATATATTGGTAAACAACGATGGTGTTCTGAAAATAGGAGATTTTGGCTTGGCAAATACCCTGAGCACAAATAACAAGCAACCACTAACCAGTCGTGTTGTGACTTTATGGTATCGTCCACCTGAGTTATTGATGGGTGCAACCAATTACAATGTATCGGTGGATCTCTGGAGTGTGGGTTGTGTATTTGCCGAACTGTACCTGGGAAAGCCAATTCTTAAAGGGAGAACAGAGGTTGAACAGTTACACAAGATCTTTAAACTTTGTGGTTCTCCACCCGATGACTTCTGGAAAAAATCAAGGCTCCCTCATGCTATGTTCAAACCCCAAAGTCATTATGAGAATTCTATTACGGAAAGGTGTAGAGATTTTCCAGAAACTGCTGTAAACCTGATAGAAGTTTTCTTGTCCATAGAACCGTCACAGCGTGGCACTGCCTCCTCAGCATTGATGTCAGAGTACTTTCGCACCAAGCCATATGCCTGCGATCCCTCAAGCTTACCAAAGTATCCTCCAAACAAAGAAATCGATGCTAAAATCCGTGACGACGTCCTCAGGAAAAGGGCTGGTATTAAAACAAGAGAGGCAGGACCAGCTAGAAAGCCGGTTAGAGCACATAAAGTTTCTCAAGAGAAAAACAGTAACAGAGCAGCTTCAAAAGAGGAAATTCATAGTGGCCATTCTAGTCGTAGAGACAGTATCCGGAGCCATGGAGTTACCAAAGGAAGGAGTGGTGCATCAATGCGTAAAGAGCTGTTGAAGCAACCTTTTGACGTAGTTTCAGACATTGCACAGATTAATGGCAATCATGGCTATGGCATGTATGATGGATCCACTGGTGGCTTTTCCTGGGCAAACAATGGAGTTGCAGATGCATCATCAGTATTGTCAGATGGCTCAAAGAGCAAAGTCAGTGCCTTGGATCCATCATTTGCAAAAGGCACATACAAGATTCAAAAGAAAATGTATAAAGCCAACAAGAACACCAGTCCTCCAGTGCAAATGCAACAGCGACGATCTGGTCAACCAATGGATATTCTCGATTATCAGGGCATTGATGTTGAGTATCAAGACAGAGAACCAATGGATATTCTCGATTATGATGAGGGCTATTACAAGAGTCCAACAGAAATGATGGAAACCTCATGCACAATGGTACACAGAAATGACTTGGAAGAAATGTTACAAGAAAACGGTTCCCAAGCTTATCGAAAATCCAGATTTGAAAGAGGTATGAAGAATCGCCTTCCATTTGTGAATTCGGACTCACATCAGCTTATCAATCTCAAATCCTAA	2088	0.4411	MGCIHSKRASRKSSRLQRSRSRSRSHSPAPYIYSVASVADRDNNINLILEPEAHSGILILENKGDGKSTSSAEDKSREAKRKSKTSSSTKASFGLKLGLSVRHTQAEQNAAGWPSWLTSVASEAIHGWVPLRADAYEKLEKVGQGTYSSVFRAREVETGRMVALKKVRFDTFQPESIRFMAREITILRRLDHPNVMKLEGLITSRLSNSIYFVFDYMEHDLAGLVSNPEITFTESQVKCYMRQLLSGIEHCHLRGIMHRDIKTSNILVNNDGVLKIGDFGLANTLSTNNKQPLTSRVVTLWYRPPELLMGATNYNVSVDLWSVGCVFAELYLGKPILKGRTEVEQLHKIFKLCGSPPDDFWKKSRLPHAMFKPQSHYENSITERCRDFPETAVNLIEVFLSIEPSQRGTASSALMSEYFRTKPYACDPSSLPKYPPNKEIDAKIRDDVLRKRAGIKTREAGPARKPVRAHKVSQEKNSNRAASKEEIHSGHSSRRDSIRSHGVTKGRSGASMRKELLKQPFDVVSDIAQINGNHGYGMYDGSTGGFSWANNGVADASSVLSDGSKSKVSALDPSFAKGTYKIQKKMYKANKNTSPPVQMQQRRSGQPMDILDYQGIDVEYQDREPMDILDYDEGYYKSPTEMMETSCTMVHRNDLEEMLQENGSQAYRKSRFERGMKNRLPFVNSDSHQLINLKS*	696

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte6g01095	695	ProSiteProfiles	Protein kinase domain profile.	136	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte6g01095	695	FunFam	probable serine/threonine-protein kinase At1g54610	219	459	-	-
	Pte6g01095	695	MobiDBLite	consensus disorder prediction	454	502	-	-
	Pte6g01095	695	MobiDBLite	consensus disorder prediction	8	22	-	-
	Pte6g01095	695	MobiDBLite	consensus disorder prediction	67	85	-	-
	Pte6g01095	695	Gene3D	Phosphorylase Kinase; domain 1	123	218	-	-
	Pte6g01095	695	Pfam	Protein kinase domain	136	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte6g01095	695	CDD	STKc_CDK9_like	136	419	-	-
	Pte6g01095	695	SMART	serkin_6	136	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte6g01095	695	PANTHER	CELL DIVISION PROTEIN KINASE	134	423	-	-
	Pte6g01095	695	MobiDBLite	consensus disorder prediction	60	87	-	-
	Pte6g01095	695	MobiDBLite	consensus disorder prediction	454	513	-	-
	Pte6g01095	695	FunFam	probable serine/threonine-protein kinase At1g54610	123	218	-	-
	Pte6g01095	695	MobiDBLite	consensus disorder prediction	1	27	-	-
	Pte6g01095	695	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	256	268	IPR008271	GO:0004672\|GO:0006468
	Pte6g01095	695	Gene3D	Transferase(Phosphotransferase) domain 1	219	456	-	-
	Pte6g01095	695	ProSitePatterns	Protein kinases ATP-binding region signature.	142	165	IPR017441	GO:0005524
	Pte6g01095	695	SUPERFAMILY	Protein kinase-like (PK-like)	129	425	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte6g01095	Pte-Chr6	28986735	28989818	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte6g01095	128	443	Core Cell Cycle Gene Families	AT5G10270	47.147	2.96e-102	320

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Pte6g01095		Pkinase	6.4e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte6g01095	-		-	qsa:O6P43_009114	738.799