Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01093 ATGCAGACCAAGAACAGAGCATGCAAGAGTGACAAGCTCCTCTCCACAATAGCACCGAGCTCCAACTCCTCCATGGCGTGGTGTGTAGATGCTGCTAGTAGACATAGAGTTGCTGCACGTTTGAGTGTGAAAGAAAAAAAATGCAGACCAAGAACAGAGCATGCAAGGGAGAAAGCTAGAGATGTCTGGAGTAACATACGCACTAGGGCAATGGAAGAATATATAAAGAGAGCTGAAGCATTTCTTCTGTCGTTTTGCAAAATTGCATTCTTCCTCGAGATCGATCGAACTGCTCGACGTTACGGACAAGCTGGAATGGATGGACACACTGGGCGGAGTGGTACCAGCGTGGATATGTTTTTGCCAAATTATAAATTGGGAAAAACACTTGGAATTGGGTCATTTGGCAAAGTGAAAATTGCCGAGCATGCACTAACTGGTCACAAGGTTGCTGTTAAGATCCTTAACCGTCGCAAGATAAAGAATATGGAAATGGAAGAAAAAGTAAGAAGAGAAATCAAGATATTGAGACTGTTCATGCATCCACACATCATAAGACTTTATGAGGTCATAGAGACCCCAACTGACATATATCTTATTATGGAGTATGTGAAGTCTGGTGAGCTCTTTGATTATATCGTGGAGAAGGGAAGGTTGCAAGAGGATGAAGCTCGGCATTTCTTCCAGCAGATAATCTCTGGTGTGGAGTACTGTCATAGGAATATGGTTGTTCATAGAGACCTTAAACCTGAGAATTTACTTTTGGACTCTAAACGTAATGTGAAGATTGCTGACTTTGGTTTGAGCAATATCATGCGTGATGGACATTTTCTTAAGACAAGTTGCGGAAGCCCAAACTATGCTGCTCCTGAGGTAATCTCTGGGAAATTATATGCTGGTCCTGAAGTCGATGTCTGGAGCTGTGGTGTCATATTGTATGCTCTTCTCTGCGGCACCCTTCCTTTTGATGATGAGAACATTCCAAATCTTTTTAAGAAAATAAAGGGTGGGATTTACACTCTTCCCAGCCATCTGTCTCCTGGTGCTAGAGACTTAATCCCTAGGATGCTTGTGGTGGATCCCATGAAGAGAATGACTATACCTGAGATACGCCAACACCCATGGTTCCAAGCTCGTCTGCCTCGCTATTTAGCTGTGGCCCCACCTGATACAATGCAGCAAGCAAAGAAGATTGATGAGGAGATTCTTCAGGAAGTGGTGAAGATGGGATTTGACCGGAACCAATTAGTTGAATCTCTGCGTAATAGAGTACAAACTGAGGGTACTGTAGCATACTATTTGTTATTGGACAACCGATTCCGGGCTTCCAGTGGCTATCTTGGAGCTGAATTTCAAGAAACTCTGGAAACTGGGTTTAATCGAATGCATCCTGGTGAGCTTGGTGCTCTGGCTGTTGGGCACCGCCTTCCTGCAGGCTATATGGATTATCAAGGGATGGGATTAAGGCCACAGTTTCCAGTTGAAAGGAAATGGGCTCTTGGACTTCAGTCTCAAGCACATCCTCGGGAGATAATGACGGAGGTTCTGAAAGCCTTGCAAGCGTTAAATGTTTGCTGGAAGAAGATTGGCCATTACAACATGAAATGCCGGTGGACTTCTGTTCACGATGATGGCATGATTAATACCGTGCATAGTAATAATTATTTTTGTGATGATTCTGCCATCATTGAGAATGATGCTATCAACAAGTCACCCAACGTGGTCAAGTTTGAAGTGCAGTTATACAAAACCAGGGAGGAGAAGTATCTGCTTGATCTTCAGAGGGTCCAGGGTCCACAATTCCTTTTCTTGGATCTTTGTGCTGCTTTTCTTGCCCAACTTCGAGTTCTTTGA 1854 0.438 MQTKNRACKSDKLLSTIAPSSNSSMAWCVDAASRHRVAARLSVKEKKCRPRTEHAREKARDVWSNIRTRAMEEYIKRAEAFLLSFCKIAFFLEIDRTARRYGQAGMDGHTGRSGTSVDMFLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAVKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYLIMEYVKSGELFDYIVEKGRLQEDEARHFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKRNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQARLPRYLAVAPPDTMQQAKKIDEEILQEVVKMGFDRNQLVESLRNRVQTEGTVAYYLLLDNRFRASSGYLGAEFQETLETGFNRMHPGELGALAVGHRLPAGYMDYQGMGLRPQFPVERKWALGLQSQAHPREIMTEVLKALQALNVCWKKIGHYNMKCRWTSVHDDGMINTVHSNNYFCDDSAIIENDAINKSPNVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01093 617 CDD STKc_AMPK_alpha 121 376 - -
Pte6g01093 617 CDD UBA_SnRK1_plant 398 438 - -
Pte6g01093 617 ProSitePatterns Protein kinases ATP-binding region signature. 130 153 IPR017441 GO:0005524
Pte6g01093 617 CDD AMPKA_C 495 614 - -
Pte6g01093 617 Gene3D Kinase associated domain 1, KA1 501 615 - -
Pte6g01093 617 FunFam Non-specific serine/threonine protein kinase 112 203 - -
Pte6g01093 617 Pfam Protein kinase domain 124 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g01093 617 Pfam UBA/TS-N domain 398 434 IPR015940 -
Pte6g01093 617 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 397 437 IPR015940 -
Pte6g01093 617 SMART uba_6 399 436 IPR015940 -
Pte6g01093 617 SUPERFAMILY KA1-like 433 616 IPR028375 -
Pte6g01093 617 Pfam Kinase associated domain 1 574 616 IPR001772 -
Pte6g01093 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Pte6g01093 617 Gene3D Transferase(Phosphotransferase) domain 1 115 453 - -
Pte6g01093 617 ProSiteProfiles Protein kinase domain profile. 124 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g01093 617 SMART serkin_6 124 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g01093 617 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 568 616 IPR001772 -
Pte6g01093 617 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 58 408 - -
Pte6g01093 617 FunFam Non-specific serine/threonine protein kinase 115 454 - -
Pte6g01093 617 FunFam Non-specific serine/threonine protein kinase 501 615 - -
Pte6g01093 617 SUPERFAMILY Protein kinase-like (PK-like) 121 389 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01093 Pte-Chr6 28953815 28959323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01093 124 376 CBL-interacting serine-threonine protein kinases AT4G24400 53.150 1.32e-92 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Pte6g01093 Pkinase 2.6e-81 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01093 K07198 - qsa:O6P43_009110 944.11