Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01092 ATGGCCAGAAAGAGAAAGAGTGTTGAAGCACAAGAGGAGAAGAATTCAAGTGAAGGAACCATGGCTTGGGATGAGATGGTAAAGGAGGCTGCTGCTGCTGCTGCTGTCCTTGGAGGAACTCGTAGAGCCCGGAAACGATTCGTCGGTGTCCGGCAACGGCCATCAGGTAGATGGGTGGCCGAAATAAAGGACACCATACAAAAGATAAGAGTGTGGTTAGGCACCTTTGACACAGCTGAAGAAGCAGCCAGAGCTTATGATGAAGCTGCTTGCTTGCTGCGTGGAAACAATACCAGAACAAACTTCTGGCCTTGTCCTTCGTCTTCATCAACTCCAGCTCTTCCTACAAAGATTACTAATCTTCTACTGCAAAGGCTTAAAGCCAAGAACAATTCTTGTTCTTCTTCTTCACCTACACTTACCCTTGATCAAAAACAGGAGCAACAAGTTGTAGATGGATACAGACAAGAAGCAACAGGATTTCCTCAAACCCAATTGAGTGATTTCCTAAATGGTGCTGAAGAGTACGGTGCTAGCTATGAAGACTATACCATTGATCACATGAGTGGCAATCTTCAATCTTGGCTAACTCAAACTAATGGCTGTGGTGGAATAGGAGGTATGAATTTTGAATATTTCAGCAGCGGAGGGCAGACTTCAAGCACCAATGAAAGTTCTGAAGGGGAAGGAAAGGAAGACACTGAAGGTGAGAGCACTGCGGTGAGTGAAATGGATTTTCAATTTTTGGATAATATCGGTCCTTCAAGTTACTACTCTCCCTTTGAGATGGCACAAGATATTGAAGAACCTGTTGAGACAGAGAACTATATGGATGAATCCGCCATGCTTAGAGCAGCCATGAAAAGGATGAAATATGAAAGGAAATTTTCAGCTTCTCTCTATGCCTTCAATGGAATACCTGAATGCTTGAAGGTGAAACTTGAGTCGAGAAACGCAAGTAATATGATCCGTGGGGAGGAAAGTCAAATAGGTGCTGTGATCCATGGAGGAATTGAAAAGAAAGAAGATGAGAGCTTAGCAACTTCAACAGACATGGAGTCACCTACAACCTCTTCAAGCATTGAGGCTGACTTCTCCCTTTGGAATTCATTAGATCCCATATGTTTCGTTAATTAA 1137 0.4345 MARKRKSVEAQEEKNSSEGTMAWDEMVKEAAAAAAVLGGTRRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGNNTRTNFWPCPSSSSTPALPTKITNLLLQRLKAKNNSCSSSSPTLTLDQKQEQQVVDGYRQEATGFPQTQLSDFLNGAEEYGASYEDYTIDHMSGNLQSWLTQTNGCGGIGGMNFEYFSSGGQTSSTNESSEGEGKEDTEGESTAVSEMDFQFLDNIGPSSYYSPFEMAQDIEEPVETENYMDESAMLRAAMKRMKYERKFSASLYAFNGIPECLKVKLESRNASNMIRGEESQIGAVIHGGIEKKEDESLATSTDMESPTTSSSIEADFSLWNSLDPICFVN* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01092 378 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Pte6g01092 378 CDD AP2 45 102 IPR001471 GO:0003700|GO:0006355
Pte6g01092 378 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Pte6g01092 378 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Pte6g01092 378 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 308 - -
Pte6g01092 378 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Pte6g01092 378 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Pte6g01092 378 MobiDBLite consensus disorder prediction 213 239 - -
Pte6g01092 378 FunFam ethylene-responsive transcription factor RAP2-11 45 104 - -
Pte6g01092 378 SUPERFAMILY DNA-binding domain 46 103 IPR016177 GO:0003677
Pte6g01092 378 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01092 Pte-Chr6 28951407 28953425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01092 44 122 AP2-EREBP Transcription Factor Family AT5G19790 73.750 2.12e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte6g01092 AP2 6.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01092 K09286 - qsa:O6P43_004449 416.001