Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01088 ATGGCAGCTCGTGTTATCAACGTTTCACAAGATGGAACAGGAGACTTTACGACTGTACAAGAAGCCATTGATGCCATCCCGTTATCCAATATATGCCGTATGGTTATTCGGGTTGCTCCAGGCATCTACGAGCAGCCGGTGTATGTTCCCAAGACCAAGAATTTTATCACTCTGGCTGGCCTCAGCGCTGAAGACACTTTGCTGACATGGAATAACACTGCTACCAGAATTGAACATCATCAGGCTCCCCGGGTTATAGGAACCGGGACTTTTGGTTGTGGGAGTACCATTGTGGAAGGGGAAGATTTCATCGCTGAGAATATCACGTTTGAGAATTCTTCTCAGAAGGGATCTGGCCAAGCTGTAGCAATCAGAGTTACAGCAGATAGGTGCGCATTCTATAATTGCAGATTCCTTGGGTGGCAGGACACTTTGTATTTACATTATGGCAAGCATTATTTGAAGGATTGCTATATCGAAGGAAGTGTGGATTTCATTTTCGGCAATAGCACTGCTCTTTTGGAGCATTGTCATGTACACTGCAAGTCCGAAGGATTCATAACAGCTCAAAGCAGAAAATCTTCTCAGGAGACAACTGGTTATGTTTTCTTAAGATGCGTTATCACTGGTAATGGGAAGCCTTCATACACTTATCTTGGGCGACCTTGGGGACCTTTCGGAAGAGTGGTCTATGCATACACATACATGGATCAATGTATAATACATCATGGGTGGGATAACTGGGAAAAAGTGGAGAACGAGAGGAGTGCTTGCTTTTATGAGTACAGGTGCCATGGACCTGGTAGTTGTCCATCCAAAAGAGTAACATGGGCAAGAGAATTGGTGGATGAAGAAGCAGGAGAGTTCCTGATGCATAGTTTCATTGATCCTGACGTGACCAAACCTTGGCTTGCTCTGAGAATGGGCGTCAGGATACCCTATTCTGCTTAA 951 0.449 MAARVINVSQDGTGDFTTVQEAIDAIPLSNICRMVIRVAPGIYEQPVYVPKTKNFITLAGLSAEDTLLTWNNTATRIEHHQAPRVIGTGTFGCGSTIVEGEDFIAENITFENSSQKGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKHYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSEGFITAQSRKSSQETTGYVFLRCVITGNGKPSYTYLGRPWGPFGRVVYAYTYMDQCIIHHGWDNWEKVENERSACFYEYRCHGPGSCPSKRVTWARELVDEEAGEFLMHSFIDPDVTKPWLALRMGVRIPYSA* 317
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01088 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Pte6g01088 316 FunFam Pectinesterase 2 309 - -
Pte6g01088 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 3 298 - -
Pte6g01088 316 SUPERFAMILY Pectin lyase-like 2 303 IPR011050 -
Pte6g01088 316 Pfam Pectinesterase 6 296 IPR000070 GO:0030599|GO:0042545
Pte6g01088 316 Gene3D - 2 307 IPR012334 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pte6g01088 Pte-Chr6 28917384 28922087 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01088 4 307 Carbohydrate Esterase AT5G47500 38.978 5.27e-71 223