Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01081 ATGGGTCGATCACCATGCTGTGACAAGGTAGGTTTAAAGAAAGGACCGTGGACGCCAGAGGAGGATCAGAAACTCTTGGCATATATCGAAGAACATGGCCATGGAAGCTGGCGTGCCTTGCCTGCAAAAGCAGGTCTTCAGCGATGTGGCAAGAGCTGCAGACTGAGATGGACTAATTACCTTAGACCTGATATAAAGAGGGGAAAGTTCAGTGTGCAAGAAGAGCAAACCATCATTCAACTCCATGCGCTCTTAGGGAACAGGTGGTCAGCTATAGCCACTCACCTGCCAAAGAGAACAGATAATGAAATTAAGAACTACTGGAACACACATCTGAAGAAAAGATTAGCCAAAATGGGAATCGACCCCGTCACACACAAACCCAAGAATGATGCTCTTCTCTCTAGTGATGGCCAGACAAAGAATACAGCCAACCTTAGTCACATGGCTCAGTGGGAAAGTGCTAGGCTCGAAGCTGAAGCCAGACTAGTTAGAGAATCAAAGATACGTTCACATTCATTTCAGCAACAGCATGCAAACTCTGGATTGATGATTTCTTCATCTTCTACGACAGCGTCTAACCAACTTTTGGGTAAGTCAGATACAGCCCCAATGCAATCTCACTCTCTAGATGTTCTCAGAGTTTGGAATCAAGTCAATGGGAACGGTTGTCTTGCAGACCTTGAATCTCCCACTTCTACCTCAACTTTCTCTGAGAATAATGTACTACCCATCATGATTACTGGACTTGGGGAGAGTAGCAAAACTATGATTGAATTTGTTGGTACTTCAGGTTCTTCTGAAGCTGGAACTGTTAAGGAAGAAGGTGAACAAGATTGGAAGAGTTATGAGAATTCGATACACTTAGCTGAATACAAAGATACTCTGGAACACTCGATGTCATTTACGTCAGGTTTACATGACTTAACAATGTCCTTGGAAGGTACATGGTCGTCTGAGTCTCTCAGAGCTAACACTGGTGGCCACGTTCGTCTTGAAAATCTTATGACCGATGAGGGTTTCACTGATCTTTTGCTCAATAGTTCCGATGAACAAAGTGTGTCAGATACCGGCGGCAGTGGTAGTGACTACTGTGAAGACAGGAACTACTGGAACAGCATTCTTAATTTTGTCAATTCTCCATCGGACTCCCCCAAGTTCTGA 1164 0.4424 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPKNDALLSSDGQTKNTANLSHMAQWESARLEAEARLVRESKIRSHSFQQQHANSGLMISSSSTTASNQLLGKSDTAPMQSHSLDVLRVWNQVNGNGCLADLESPTSTSTFSENNVLPIMITGLGESSKTMIEFVGTSGSSEAGTVKEEGEQDWKSYENSIHLAEYKDTLEHSMSFTSGLHDLTMSLEGTWSSESLRANTGGHVRLENLMTDEGFTDLLLNSSDEQSVSDTGGSGSDYCEDRNYWNSILNFVNSPSDSPKF* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01081 387 CDD SANT 69 112 IPR001005 -
Pte6g01081 387 FunFam MYB transcription factor 69 116 - -
Pte6g01081 387 CDD SANT 16 61 IPR001005 -
Pte6g01081 387 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte6g01081 387 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte6g01081 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte6g01081 387 FunFam MYB-related transcription factor 13 66 - -
Pte6g01081 387 Gene3D - 69 116 - -
Pte6g01081 387 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte6g01081 387 Gene3D - 13 66 - -
Pte6g01081 387 SMART sant 66 114 IPR001005 -
Pte6g01081 387 SMART sant 13 63 IPR001005 -
Pte6g01081 387 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 235 - -
Pte6g01081 387 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte6g01081 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte6g01081 387 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01081 Pte-Chr6 28873895 28876866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01081 1 384 MYB Transcription Factor Family AT3G01140 52.605 1.82e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte6g01081 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01081 K09422 - cave:132181307 552.747