Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01075 ATGAGGCTGTCTCCATTTCTCTGTGCTATTGGATTTTTCTCCATAGTATCATCCATTGATGCCTATGGCTATGGTTGTTGGACCCATGCACATGCCACTTTCTACGGTGGGAGTGATGCTTCAGGGACAATGGGTGGTGCTTGTGGATATGGAAACCTGTACAGCCAGGGCTATGGGACGAGTACCGCTGCTTTGAGCACCGCATTGTTCAACAATGGCTTGAGCTGTGGTGCATGTTTTCATATTAGATGTGTAGATGATCCACAATGGTGTCTTCCTGGCTCCATTATAGTGACTGCAACCAATTTTTGCCCACGTGGTGGCTGGATCCACTGTGAAAGAAATGGTGGAATCAGTTTCATTATCCATGGCCATCCCTACTTCAATTTATTCCTTGTAACCAATGTTGGTGGTGCTGGTGATGTACATGCAGTCTTCATTAAAGGTTCGAGAACTGGATGGCAAGCAATGCTAAGGAACTGGGGCCAGAATTGGTAG 498 0.4639 MRLSPFLCAIGFFSIVSSIDAYGYGCWTHAHATFYGGSDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGACFHIRCVDDPQWCLPGSIIVTATNFCPRGGWIHCERNGGISFIIHGHPYFNLFLVTNVGGAGDVHAVFIKGSRTGWQAMLRNWGQNW* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01075 165 SUPERFAMILY Barwin-like endoglucanases 26 135 IPR036908 -
Pte6g01075 165 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 109 IPR007112 -
Pte6g01075 165 PANTHER EXPANSIN-A15 110 165 IPR002963 GO:0009664
Pte6g01075 165 CDD DPBB_EXPA_N 27 109 - -
Pte6g01075 165 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Pte6g01075 165 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Pte6g01075 165 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Pte6g01075 165 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 127 165 IPR007117 -
Pte6g01075 165 PRINTS Expansin signature 23 37 IPR002963 GO:0009664
Pte6g01075 165 PRINTS Expansin signature 128 149 IPR002963 GO:0009664
Pte6g01075 165 PRINTS Expansin signature 116 128 IPR002963 GO:0009664
Pte6g01075 165 PRINTS Expansin signature 163 165 IPR002963 GO:0009664
Pte6g01075 165 SMART dpbb_1 62 146 IPR007112 -
Pte6g01075 165 Pfam Expansin C-terminal domain 118 165 IPR007117 -
Pte6g01075 165 Gene3D - 14 143 IPR036908 -
Pte6g01075 165 Pfam Lytic transglycolase 62 106 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01075 Pte-Chr6 28838413 28839441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01075 1 165 Expansin Gene Family AT1G69530 58.537 1.21e-75 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01075 K20628 - qsa:O6P43_004469 272.322