Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01061 ATGACAACTCAGAATCGGTTCGGCGAGAACAAATGTTTGAGAGAAGTAGAAGAACAAAAACCCTATCGCGGAAGAGAAGGCGCAGCAGATACTGTAGAGAAAGATGAGAAATTGGATGGGAAGACCTTTAAAAAGCCTCGTCGTCCATATGAGAAAGAGCGGTTGGACCACGAGTTAAAGCTGCTTCTCACTCTTGATGAGAAGAACCCTCGTAGAATCTTTGAGGGTGAAGCCTTTCTCCGTAGGATGAACAGGTATGGTCTATTGGATGAGAGTCAGAACAAGCTTGATTATGTCTTGGCCCTAACTGTAGAGAATTTCCTTGAGCGACGTCTTCAAACTCTTGTGTTCAAGTCTGGTATGGCCAAGTCCATCCACTATGCTCGTGTGCTTATCAGGCAAAGACATATCAGGGTTGGAAGGCAGGTTGTGAATATTCCATCTTTCATGGTCAGGGTTGCTTCTCAGAAGCACATCGACTTCTCCCTAACAAGTCCATTTGGAGGTGGTCGTCCTGGTCGAGTGAAGCGAAAGAACCAGGAGGCAGCTGCAAAGAAGGCTGCCGGTGGAGAGGGTGAGGAGGAAGATGAGGAGTGA 597 0.4724 MTTQNRFGENKCLREVEEQKPYRGREGAADTVEKDEKLDGKTFKKPRRPYEKERLDHELKLLLTLDEKNPRRIFEGEAFLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHYARVLIRQRHIRVGRQVVNIPSFMVRVASQKHIDFSLTSPFGGGRPGRVKRKNQEAAAKKAAGGEGEEEDEE* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01061 198 MobiDBLite consensus disorder prediction 174 191 - -
Pte6g01061 198 SUPERFAMILY Alpha-L RNA-binding motif 42 153 - -
Pte6g01061 198 Gene3D - 109 166 IPR036986 GO:0003723
Pte6g01061 198 MobiDBLite consensus disorder prediction 10 43 - -
Pte6g01061 198 MobiDBLite consensus disorder prediction 166 198 - -
Pte6g01061 198 ProSitePatterns Ribosomal protein S4 signature. 108 132 IPR018079 GO:0019843
Pte6g01061 198 MobiDBLite consensus disorder prediction 1 43 - -
Pte6g01061 198 FunFam 40S ribosomal protein S9 109 189 - -
Pte6g01061 198 ProSiteProfiles S4 RNA-binding domain profile. 110 181 - -
Pte6g01061 198 PANTHER 30S 40S RIBOSOMAL PROTEIN 59 184 IPR022801 GO:0003735|GO:0015935|GO:0019843
Pte6g01061 198 SMART s4_6 110 181 IPR002942 GO:0003723
Pte6g01061 198 Pfam S4 domain 110 153 IPR002942 GO:0003723
Pte6g01061 198 CDD S4 110 153 - -
Pte6g01061 198 NCBIfam 30S ribosomal protein S4 66 167 IPR005710 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01061 Pte-Chr6 28685758 28688444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01061 40 188 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 76.836 1.66e-92 267