Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01057 ATGTCAAGAGAGGTCTTTGGACTGCTGAAGAGGATGCAAAAAATACTGGCTTATGTTTCCAATCACGGTATTGGAAATTGGACACTGGTTTCAAAGAAAGCAGGGCTCAATAGATGTGGCAAGAGCTGCCGGTTAAGATGGACTAACTACCTCGGACCTGATCTCAAGCATGATAGTTTCACTCAACAAGAAGAAGCGCTTATTATAAGCCTTCACAAAGCTATAGGCAGAAGGTGGTCTTTAATTGCAAAGCAACTGCCAGGGAGAACAGACAATGATGTTAACAATTACTGGAATACAAAACTCAAAAAGAAGCTTATCAAGATGGAAATTGATCCAGTCACTCATAAGCCTTTTCCTCAGGTCCTTTCTTATTATGGTCACATCAGTTGCCTCTCTACTAGCAACCATATAGGGCCTGTCAATAAGACCGTAGGAAACAAAGGACAGCAGAAACAACTTCATCTACTGGCCACGCTAGATTTTCAAACGCTAGCATAA 501 0.4152 MSREVFGLLKRMQKILAYVSNHGIGNWTLVSKKAGLNRCGKSCRLRWTNYLGPDLKHDSFTQQEEALIISLHKAIGRRWSLIAKQLPGRTDNDVNNYWNTKLKKKLIKMEIDPVTHKPFPQVLSYYGHISCLSTSNHIGPVNKTVGNKGQQKQLHLLATLDFQTLA* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01057 166 CDD SANT 13 51 IPR001005 -
Pte6g01057 166 Gene3D - 11 56 - -
Pte6g01057 166 Pfam Myb-like DNA-binding domain 13 51 IPR001005 -
Pte6g01057 166 Pfam Myb-like DNA-binding domain 59 100 IPR001005 -
Pte6g01057 166 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 106 IPR017930 -
Pte6g01057 166 ProSiteProfiles Myb-like domain profile. 13 51 IPR001005 -
Pte6g01057 166 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Pte6g01057 166 FunFam transcription factor MYB80 59 119 - -
Pte6g01057 166 PANTHER F14D16.11-RELATED 13 144 - -
Pte6g01057 166 CDD SANT 59 102 IPR001005 -
Pte6g01057 166 SMART sant 10 53 IPR001005 -
Pte6g01057 166 SMART sant 56 104 IPR001005 -
Pte6g01057 166 SUPERFAMILY Homeodomain-like 13 98 IPR009057 -
Pte6g01057 166 Gene3D - 58 118 - -
Pte6g01057 166 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 51 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01057 Pte-Chr6 28628076 28629096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01057 14 130 MYB Transcription Factor Family AT3G28470 75.214 1.43e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte6g01057 Myb_DNA-binding 6.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01057 K09422 - qsu:112027568 222.631