Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01044 ATGGATATGGGAGGGAATTGGATTAAGTTATTTTTCCTCCTTGTAGCTTTTGCCATTGCAGTTCCATGTCTAAATGCAGGCATTGCTGAAGAGGATGATTTCACGAAGCAGCTAGAAGAGCAAGCCCGTCAAGCTGCTGAGAATGCTTATACTCCTGACCCTGAAAGCATTGCCCAAGATTTGTATTCACAAACTCGAAGGTCGAACTTGGACTCGACCAACAGCACCAGGAGGAGCTTGGCACATAGGATTGATGCTAAAGAAGCAGTATGGAAGAACTGGCAATGGAGATCAGAGAATGACCTTTTGATGAACGGTGCAACCTTCACCCAATCCGGGTCACCACTTAAACACGACCAGGTGTCCGGCGAAAACATGATCGCCGCCAAGCACGGAAACGACGTCACGTGGCTCACAAGATTTGCAGGTGTACTTAACTGCGTCGAAGGAAAACCTTGCTAA 462 0.474 MDMGGNWIKLFFLLVAFAIAVPCLNAGIAEEDDFTKQLEEQARQAAENAYTPDPESIAQDLYSQTRRSNLDSTNSTRRSLAHRIDAKEAVWKNWQWRSENDLLMNGATFTQSGSPLKHDQVSGENMIAAKHGNDVTWLTRFAGVLNCVEGKPC* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01044 153 Gene3D - 40 146 IPR012334 -
Pte6g01044 153 PRINTS Pollen allergen Amb family signature 94 118 IPR018082 -
Pte6g01044 153 PRINTS Pollen allergen Amb family signature 124 147 IPR018082 -
Pte6g01044 153 Pfam Pectate lyase, N terminus 28 80 IPR007524 GO:0030570
Pte6g01044 153 PANTHER PECTATE LYASE 18-RELATED 74 151 IPR045032 GO:0030570
Pte6g01044 153 SUPERFAMILY Pectin lyase-like 86 144 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01044 Pte-Chr6 28505287 28506863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01044 78 154 Polysaccharide Lyase AT3G01270 48.052 3.62e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01044 K01728 - gmx:102664159 112.079