Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01043 ATGAAGGAAGGCCAACTCTTTAACAGTATCGCCCTTGGAGGCCGTGGAGGCACAAGTCTAGGACAGATGAGAATATATTCGGGGGGTATTGCATGGAAGAAACGGGGTGGTGATAAAGCTGTTGAGCTTGACAAGGCAGATATGCTAGAATTGATATGGATGAAGGTTCCCAGGACGAACCAGCTTGGAATCAGGAGCAAAGATGGGGTGTACTTTAAGTTTGTCGGATTCCGTGACCAGGATGTAGCAAGTTTAACAACTTATTTCCAAAATACTTTTGGTATAACACCATCAGTGAAGCAGCTTTGTGTCAGTGGACGCAATTGGGGAGAAGTTGAGCAAAAAGAGAACATGCTGGCTTTTATGGTTGATTCGAAGCAAGCTTTTGAAATATCCTTATCAGATGTCCACCAAGCACAGAATCAAGGGAAAAATGACGTTATATTGGAGTTTCACGTGGATGATACTATGGGAGCTAATGAAAAAGATTCACTTATGGAGATAAGTTTCCACATACCCAGTTCAAACACCCAATATGTCGGTGATGAAAATAAGCCTCCTTCTCAGGTTTTCCACGATAGAATAATGTCATGGGTAGATAATGGCAATGGAGATGATGCTGTTGTTACATTTGATGGGATTGCGATTCTTACACCAAGGGGACGATACAATGTTGAACTTCATCTATCATTTTTACGGCTTCAAGGGCAGGCTAATGATTTCAAAATTCAGTATAGCAGCATTATTCGCCTATTTTTACTTCCTAAGTCTAACCAGCCACATACTTTTGTCATTATCTCTCTTGATCCTCCAATTCGTAAGGGACAGACTTTGTACCCACATATAGTATTGCAGTTTGAGACTGATTCTGTTGTTCAAAATACTTTGTCCATGGGTGAAGATCTTCTGAACACCAAATACAAGGACAAGTTGGACCCATCTTATAAGGGGCTTATTCATGAAGTGTTCACCACTATATTACGTGGTCTTTCTGGTGCCGAAGTTACCAAACCTGGAAAATTCCGCAGTGTTCAAGATGGCTATGCGGTGAAGTCCTCTTTGAAGGCTGAAGATGGAATTCTGTACCCTCTTGAGAAAAGCTTCTTCTTTCTACCCAAGCCACCTACTCTTATCCTTCATGAGGAGATTGACTACGTGGAATTCGAGAGGCATGCTGCTGGTGGATCAAATATGCAGTACTTTGACCTGCTTATAAGATTAAAAACTGAGCAAGAGCACCTTTTCCGGAATATCCAGAGGAATGAATACCACAATCTATTTGACTTCATCAGTAGTAAAGGCCTAAAGATAATGAACTTGGGCGGTGTGCATTCTGCGGATGGTGTGGCTGCTGTTCTTCAGGATGATGTTGATGATGCTGTTGATCCACATCTTGAACGCATCAAGAATGAAACTGGCGGGGATGAGAGTGATGAAGAGGATGAAGATTTTGTGGCAGACAAAGATGATGGAGGTTCTCCAACGGATGATTCGGGTGTTGATGACTCTGATGCCAGTGACAGTGATGGGGAAAAAGAGAAGTCTGTGAAAAAGGATACGAAGAAAGAATCATCGTTGAAGGCATCTACTTCTAAAAGGAAATCTAAAGACGGTGATGAAGAGGGGAAAAAGAAGAGACTAAAGAAGAAGAAAGACCCCAGTGCACCTAAAAGAGCTATGTCTGGATTCATGTTCTTCTCGCAAATGGAGAGAGAGAACGTAAAGAGAAGTAACCCGGGACTTTCATTCACTGATCTGGGAAGACTACTTGGGGAAAAATGGAAAAAAATGACAGCTGAGGAGAAGGAACCATATGAAGCAAAAGCTCGAGCTGACAAAAAACGTTATATGGATCAGCTTAGTGGATACAAGAACCCCCAAACGATGAAGCTGGATTCTGCAGATTAA 1908 0.4203 MKEGQLFNSIALGGRGGTSLGQMRIYSGGIAWKKRGGDKAVELDKADMLELIWMKVPRTNQLGIRSKDGVYFKFVGFRDQDVASLTTYFQNTFGITPSVKQLCVSGRNWGEVEQKENMLAFMVDSKQAFEISLSDVHQAQNQGKNDVILEFHVDDTMGANEKDSLMEISFHIPSSNTQYVGDENKPPSQVFHDRIMSWVDNGNGDDAVVTFDGIAILTPRGRYNVELHLSFLRLQGQANDFKIQYSSIIRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVLQFETDSVVQNTLSMGEDLLNTKYKDKLDPSYKGLIHEVFTTILRGLSGAEVTKPGKFRSVQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMQYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISSKGLKIMNLGGVHSADGVAAVLQDDVDDAVDPHLERIKNETGGDESDEEDEDFVADKDDGGSPTDDSGVDDSDASDSDGEKEKSVKKDTKKESSLKASTSKRKSKDGDEEGKKKRLKKKKDPSAPKRAMSGFMFFSQMERENVKRSNPGLSFTDLGRLLGEKWKKMTAEEKEPYEAKARADKKRYMDQLSGYKNPQTMKLDSAD* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01043 635 SMART hmgende2 555 625 IPR009071 -
Pte6g01043 635 Pfam POB3-like N-terminal PH domain 7 96 IPR035417 -
Pte6g01043 635 FunFam FACT complex subunit SSRP1 539 633 - -
Pte6g01043 635 Gene3D High mobility group box domain 539 633 IPR036910 -
Pte6g01043 635 SUPERFAMILY PH domain-like 205 439 - -
Pte6g01043 635 MobiDBLite consensus disorder prediction 505 547 - -
Pte6g01043 635 FunFam FACT complex subunit SSRP1 1 93 - -
Pte6g01043 635 CDD PH2_SSRP1-like 341 440 - -
Pte6g01043 635 CDD PH1_SSRP1-like 205 339 - -
Pte6g01043 635 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Pte6g01043 635 SMART Rtt106_2 347 440 IPR013719 -
Pte6g01043 635 Gene3D - 3 102 IPR011993 -
Pte6g01043 635 SUPERFAMILY HMG-box 543 625 IPR036910 -
Pte6g01043 635 CDD HMG-box_AtSSRP1 552 627 - -
Pte6g01043 635 Pfam HMG (high mobility group) box 556 624 IPR009071 -
Pte6g01043 635 Pfam Histone chaperone Rttp106-like 349 438 IPR013719 -
Pte6g01043 635 Gene3D - 338 445 IPR011993 -
Pte6g01043 635 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 556 624 IPR009071 -
Pte6g01043 635 PRINTS Structure-specific recognition protein signature 415 433 IPR000969 GO:0003677|GO:0005634
Pte6g01043 635 PRINTS Structure-specific recognition protein signature 240 256 IPR000969 GO:0003677|GO:0005634
Pte6g01043 635 PRINTS Structure-specific recognition protein signature 263 279 IPR000969 GO:0003677|GO:0005634
Pte6g01043 635 PRINTS Structure-specific recognition protein signature 399 415 IPR000969 GO:0003677|GO:0005634
Pte6g01043 635 PRINTS Structure-specific recognition protein signature 355 373 IPR000969 GO:0003677|GO:0005634
Pte6g01043 635 PRINTS Structure-specific recognition protein signature 218 234 IPR000969 GO:0003677|GO:0005634
Pte6g01043 635 PRINTS Structure-specific recognition protein signature 328 341 IPR000969 GO:0003677|GO:0005634
Pte6g01043 635 PRINTS Structure-specific recognition protein signature 373 390 IPR000969 GO:0003677|GO:0005634
Pte6g01043 635 Gene3D - 103 179 IPR038167 -
Pte6g01043 635 MobiDBLite consensus disorder prediction 467 563 - -
Pte6g01043 635 FunFam FACT complex subunit SSRP1 96 179 - -
Pte6g01043 635 FunFam Fact complex subunit ssrp1 199 337 - -
Pte6g01043 635 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 609 - -
Pte6g01043 635 Gene3D - 201 337 - -
Pte6g01043 635 FunFam FACT complex subunit SSRP1 338 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01043 Pte-Chr6 28498316 28504636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01043 552 624 ARID Transcription Factor Family AT1G04880 36.986 1.08e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pte6g01043 Rtt106 1.9e-20 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01043 K09272 - pvy:116145975 974.926