Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01042 ATGGATTTTCTAGTGAAGGATGAAGTGAACGTGGGAAGACGCCAGATATGCATGGTTGATGGAGCTGATCAATCCATGGGAGCTGGATGTGTGAAGAGACGAAAAAGAGAGCCTGCTGCAGCTTCTGGTGATGATCAAACTAAACACCAAAAGCTTGATCGTACTTCTGGCAAGAGCAATGTAAAGCGGAGCTCAAAGTTTCGGGGTGTCAGCAGGCACAGGTGGACTGGCAGATATGAAGCTCACTTGTGGGATAAGCTTTCCTGGAATGTAACACAGAGGAAAAAAGGAAAGCAAGGTAAACTTCGAGCTTATGATGATGAAGAAGCAGCTGCCAGAGCGTTTGATTTAGCAGCAATCAAGTATTGGGGAACATCAACCTTCACAAACTTTCCAGTATTCGATTACGAGAAGGAGATAGAGATAATGCAAACAATGACAAAAGAAGAGTATTTGGCCTCACTGAGAAGAAAGAGCAGCGGATTTTCAAGAGGGGTTTCAAAATATAGGGGAGTGGCAAGGCATCACCATAATGGTAGATGGGAAGCAAGGATAGGGCGGGTTTTCGGTAACAAATACCTCTACCTCGGCACTTACAGTACACAAGAGGAAGCTGCTCGTGCTTATGACATTGCAGCTATTGAGTACAGAGGGGTCCATGCTGTGACAAACTTTGATCTGAGTACTTACTTAAGATGGTTGAAGCCTGCTGGAGAAAATACCTGGACAGATGCTTACAAAACCGTCACCGAAGAGCCTCAGGAATTCCCTACACTGACGGAATTCTTTCCAACTGAATCACAGCCCTCTTTGTTCCATGGTGATTCCTTTGACCTAGATTGCTTGAGTTTACCGCAAAAGCAAGATGCCTTTAACAACACTGACCCTCTCAGCTCACGCAGAAAGTCCTCTCCCACTGCGCTGGGACTCTTACTTCGATCTTCAGTGTTTAGGGAACTGGTTGAGAAGAATCTGAATGGAGCACAGGATGCAACAGATGGCGGGTGCACAAAGAATCAAAGTGCAAACACAACTGGTGATGATGTATTCGGAGATGTATTTTATGAGGGAACTGAGGATACCCCTTTTGTCTGCGATACAGATGGAATTGAGTTGCAAGAAAAAGAGTTCTTCGTTTTCTGA 1143 0.4497 MDFLVKDEVNVGRRQICMVDGADQSMGAGCVKRRKREPAAASGDDQTKHQKLDRTSGKSNVKRSSKFRGVSRHRWTGRYEAHLWDKLSWNVTQRKKGKQGKLRAYDDEEAAARAFDLAAIKYWGTSTFTNFPVFDYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGVHAVTNFDLSTYLRWLKPAGENTWTDAYKTVTEEPQEFPTLTEFFPTESQPSLFHGDSFDLDCLSLPQKQDAFNNTDPLSSRRKSSPTALGLLLRSSVFRELVEKNLNGAQDATDGGCTKNQSANTTGDDVFGDVFYEGTEDTPFVCDTDGIELQEKEFFVF* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01042 380 MobiDBLite consensus disorder prediction 29 60 - -
Pte6g01042 380 FunFam AP2-like ethylene-responsive transcription factor 167 228 - -
Pte6g01042 380 Pfam AP2 domain 167 218 IPR001471 GO:0003700|GO:0006355
Pte6g01042 380 Pfam AP2 domain 65 124 IPR001471 GO:0003700|GO:0006355
Pte6g01042 380 Gene3D AP2/ERF domain 167 228 IPR036955 GO:0003700|GO:0006355
Pte6g01042 380 Gene3D AP2/ERF domain 65 134 IPR036955 GO:0003700|GO:0006355
Pte6g01042 380 SUPERFAMILY DNA-binding domain 65 133 IPR016177 GO:0003677
Pte6g01042 380 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Pte6g01042 380 PRINTS Ethylene responsive element binding protein signature 208 228 IPR001471 GO:0003700|GO:0006355
Pte6g01042 380 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 42 248 - -
Pte6g01042 380 ProSiteProfiles AP2/ERF domain profile. 168 226 IPR001471 GO:0003700|GO:0006355
Pte6g01042 380 SMART rav1_2 66 138 IPR001471 GO:0003700|GO:0006355
Pte6g01042 380 SMART rav1_2 168 232 IPR001471 GO:0003700|GO:0006355
Pte6g01042 380 CDD AP2 167 228 IPR001471 GO:0003700|GO:0006355
Pte6g01042 380 MobiDBLite consensus disorder prediction 27 67 - -
Pte6g01042 380 SUPERFAMILY DNA-binding domain 167 228 IPR016177 GO:0003677
Pte6g01042 380 ProSiteProfiles AP2/ERF domain profile. 66 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01042 Pte-Chr6 28490495 28492436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01042 30 260 AP2-EREBP Transcription Factor Family AT5G57390 53.719 9.95e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pte6g01042 AP2 6.5e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01042 - - vri:117930058 464.536