Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01041 ATGAGGAGCCGCAAAGTGGTGATCAAAAGAGAAGAGCCGTCAAGAAGCTCAACCACTTCGTCTTTCACAGTGAGGAACGTGAGATATGGAGAATGCCAAAAGAACCATGCAGCCAATGTCGGAGGATATGCCGTTGATGGCTGCAGAGAGTTCATGGCCAGTGGAGAAGGAACAGATGCTGCTCTAACTTGTGCTGCTTGTGGATGTCACAGGAGCTTTCACAGAAGAGAAGTGGAGACAGAAGTAGTATGCGAATGTTCATCACCTTCTTCAAACGGGACATAA 285 0.4772 MRSRKVVIKREEPSRSSTTSSFTVRNVRYGECQKNHAANVGGYAVDGCREFMASGEGTDAALTCAACGCHRSFHRREVETEVVCECSSPSSNGT* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01041 94 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 29 77 IPR006456 -
Pte6g01041 94 MobiDBLite consensus disorder prediction 1 20 - -
Pte6g01041 94 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 28 78 IPR006456 -
Pte6g01041 94 Pfam ZF-HD protein dimerisation region 26 78 IPR006456 -
Pte6g01041 94 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01041 Pte-Chr6 28458853 28459505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01041 1 95 Zinc finger-homeobox gene family AT3G28917 74.257 5.23e-42 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pte6g01041 ZF-HD_dimer 6.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01041 - - pop:7482471 139.043