Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01040 ATGGGAAGACCACCTTGCTGTGATAAAGAAGGAGTCAAGAAAGGTCCGTGGACTCCTGAAGAAGACATCATACTGGTCTCTCATATACAAGAACATGGTCCTGGAAATTGGAGGGCTGTTCCCACCAAAACAGGTTTACTGAGATGCAGTAAGAGTTGCAGACTTCGATGGAGTAATTACCTTAGGCCTGGTATTAAACGTGGCAGTTTTACAGAACAGGAGGAGAAGATGATCATCCACCTTCAAGCCCTTTTAGGCAACAGATGGGCTGCGATTTCTTCATACCTCCCACAGAGAACAGATAATGATATCAAGAACTACTGGAACACCCATTTGAAAAAGAAGCTCAACAAGCTTCAAACGCGTGAAGAAGGAAATTACGAAGGTGCGTTTTCATCTTCAGCCTCAATGCCTAGAGGTCAATGGGAAAGAAGACTCCAAACTGATATCAATATGGCTAAGCGAGCTCTTAATGAGGCACTCTCAACACAGAAGCAAAGCTGTTTATCTGAATTGAACCATTCTGATGAGTTTTTGTCCAGCTCTAAATTTCCCGCAGCTTCATCAACCTATGCATCAAGCACCGAGAACATAGCTCGGTTACTCAAAGGATGGATGGCAAACTCATCCAATCCAACTCGTGCTAATTCATCTGCCACCACCCAGAGTTCATTCAACAACATGGCTGGAGGCACTGACACTGCTTCTTCTAGTCATGAAGCGACACCAAGTGCGGCTAGCAGGAAGGGAATTGAATTCTCAGATGCCTTAGAGTCGCTGTTTGAGTCTTTTGACTCTTCAAATTCCGAGTTTTCTCAATCTCTTTCACCTGACACTACCCTTCTTCAAGATGAAAGCAAGCCTAATGTCGGTGAAGAATTGCACTTGTCATTTTTTGAGAAGTGGCTTTTAGAAGATGGTATCTGTTTAGAGAATATCCAGTAG 945 0.436 MGRPPCCDKEGVKKGPWTPEEDIILVSHIQEHGPGNWRAVPTKTGLLRCSKSCRLRWSNYLRPGIKRGSFTEQEEKMIIHLQALLGNRWAAISSYLPQRTDNDIKNYWNTHLKKKLNKLQTREEGNYEGAFSSSASMPRGQWERRLQTDINMAKRALNEALSTQKQSCLSELNHSDEFLSSSKFPAASSTYASSTENIARLLKGWMANSSNPTRANSSATTQSSFNNMAGGTDTASSSHEATPSAASRKGIEFSDALESLFESFDSSNSEFSQSLSPDTTLLQDESKPNVGEELHLSFFEKWLLEDGICLENIQ* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01040 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte6g01040 314 CDD SANT 69 112 IPR001005 -
Pte6g01040 314 Gene3D - 13 66 - -
Pte6g01040 314 CDD SANT 16 61 IPR001005 -
Pte6g01040 314 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 237 - -
Pte6g01040 314 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte6g01040 314 MobiDBLite consensus disorder prediction 211 248 - -
Pte6g01040 314 Gene3D - 68 130 - -
Pte6g01040 314 SMART sant 13 63 IPR001005 -
Pte6g01040 314 SMART sant 66 114 IPR001005 -
Pte6g01040 314 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte6g01040 314 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte6g01040 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte6g01040 314 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte6g01040 314 FunFam MYB-related transcription factor 13 66 - -
Pte6g01040 314 MobiDBLite consensus disorder prediction 211 244 - -
Pte6g01040 314 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01040 Pte-Chr6 28447975 28449680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01040 1 306 MYB Transcription Factor Family AT5G62470 49.296 3.58e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte6g01040 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01040 K09422 - qsa:O6P43_004488 434.491