Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01027 ATGAAGAGAACTCGTGATGATACTTATGTTGCCTCCCAATTGAAGCGACCTCCTGATTCCTCACGTGGGGATTCCTATGGACAATCCCAAGCCCCTGGTGTTGGGGGTGGAGGAGGGGGAGGCAGAAGTGGAGGGGAAGCTACTTCACAAAAATTAACAACGGATGATGCCTTGACATATCTAAAGCAAGTGAAAGAAATGTTTCAGGACCAAAGAGAAAAATATGATACGTTTCTCGAAGTCATGAAAGATTTCAAGGCTCAAAGGACGGACACTGCAGGTGTCATAGCGAGAGTGAAAGAACTATTTAAAGGGCATAACAAATTGATTTATGGATTTAATACTTTCTTGCCAAAGGGATATGAGATAACTCTGGATGAGGACAAGAATCCTCCAAAAAAGACTGTTGAGTTTGAAGAGGCTATTAGTTTTGTAAACAAGATAAAGAAACGATTCCAGAAAGATGAACATGTTTATAAATCATTTCTAGACATCTTAAATATGTATCGCAAGGAGCACAAGGACATAAGTGAAGTTTATAGCGAGGTGGCTACACTTTTTGTGGACCATCCGGACTTGCTTGACGAGTTTACTAGGTTTCTTCCAGATACTTCCGCTTCACCTCCTGCATATCCTGTTTCTCATAGACATCCAATTCAACGAGTTAATGAAAGGAGCTCTGCAACACACACAGCACAGCAGATAATGGATAAGCAACGTGTGCATCGGGATAGGCTCTTGAATTCGGGTCACGATCTGGGAGTAGACCATCCTGAGTTGGATAACGATAAGACAACAATGAAGTTGCACAAGGAGCAGAGGAAGCATGCTGAAAAGGACAACAGGGATAGGAGGAATCATGATATGGGTGGTAGAGATTGTGATAAAGATGACAGTAGGGATTATAATTTGGTGCGATTTGCAGAAAAAAAGAAGCTCATCAGGACATCGGAAGGTTTTGGAGGGAATGCGGATTTCGCCTCTTCTGATGACAAAGATGCCTTCACGAGTATGTACAGCCAAGCATTTAGTTTTTGCGAGAAAGTGAAAGAAAGGTTGGGTAGTTCTGACGATTACCAGGCATTCTTGAAATGCCTTCATATTTTCAGCAATGGAATAATTAAAAGGAATGATCTGCAAAATCTGGTAACTGATCTGCTTGGGAAGTACCCTGACCTCATGGAGGAGTTTAACGATTTCTTGGAGCGTTGTGAAAATATTGATGGGTTTCTTGCTGGTGTTATGAGTAAAATTAAAAAATCTCACATGCGAAGTTCCTTCATTTCAGAATCATTTAGTGATGCTAATTCCTCCAGACCGGTGAAGTTGGAGGACAAAGAGCAGAAGCGTGACATTGATGGAGTTAAAGAGAAAGAAAGATATAGAGAGAAGTATATGGCAAAATCTATACAAGAGCTTGACCTCAGTAACTGCCAGCGCTGTACTCCCAGCTACCGGCTTCTTCCTGACGACTATCCAATTGCTCCCGCCACTCAGAGATCTGAGTTGGGGGCTCTTGTTCTTAATGATTGCTGGGTATCTGTTACTTCTGGAAGTGAGGATTACTCTTTCAAACATATGCGAAGAAATCAATACGAGGAAAGTTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGCTGTTAGAGTCTGTAAGCTCAGCTGCTAAGCGTGTGGAGGAATTATTGAACACCTTCAAAGAGAATAAGATCAATAAGGAGACTGCCTTTCGCATTGAAGATCATTTCACAGGTTTGTATAAATCTTCACTAAACATAAGGTGTATCGAGCGTCTATATGGTGATCATGGTCTTGATGTCATTGATATATTACGTAAAAACCCAACTCTTGCTTTGCCTGTAATCCTGGCACGCTTGAATCAGAAACAAGAGGAATGGACCAAGTGCCGTGAAGATTTTAATAAGGTTTGGGCTGAAATATATGCTAAAAACCACTACAAATCTCTCGATCATCGCAGCTTCTATTTCAAGCAGCAAGATTCAAAGAATTTGAGCACCAAATCTATGGTTGCTGAGATTAAAGAAATTAAAGAGAAGCAGCAGAAAGAGGACGACATTGTTCAGACTATTGCATCTAGTAACAAACATACACTAGTCCCACACCTCGAATTTGAATATTCCGATGTGGGCATCCATGAAGACCTGTATAAACTTATCCAGTATTCATGTCAAGAGCTTTGCTCATCAAAAGAACAATTAAGTAAAGTTATGAGACTGTGGACCACCTTTATGGAGCCAATGTTGGGTGTTTCCCATCGTCCATATGGAACAGAGAGTAGAGAAGACAGAAAAGCTGGTAATGTCATGTACAGCACATCATTGAATAGAGAGAAAGAGAATAGAGGTCCTGGTGCTGTCACTACAGCAGTTAATGCCAAGCATAAAAAATCTGCAAAGAACGAAGTGGGAAGTAGAATGCTAGAAGCAGAGAATATACGCAATAGTCATGACAATGGTGATAAAGAAAAAGGTTCTACTTACAGCGATCACATCCATAGAGATGATACAATCTCTAGTAATTGCCATGATGAGAAGGAGCAGAACAATGTAAGTAATGACCCTGCTGATCAATTAGCCAACTACAATGTGCCATTTGCAGTTAATGCTGAAAATATCCACGCCAGAACAAGCTTGGAGATGACAGCAGGTTGTAGTTCCCAACATCATGATGCTGTCGGCAAAGACACTAGTGTACCACGGGGTGCCATGCTTTCCTCGGAGGTTCGTGATGGTTTTGCTGAAGCCGGCAAAGTTAGCAAACTCCGTGAAGAATCTTCTAGGCCCTTTAAAACTGAAAAGGAGGAGGGAGAGTTATCACCAAATGGTGATTTTGGGGAGGATAATTTTGTCGGATATGGAGATGCTGACTTGGCAATGCCCAAGTCAAGGCAGAGTACTGAAAGAAGGCTATACGAACCTCGTCATGTTGGGGAAGAAGATGGCTGTCAGGATGCTAGAGGAGAGAATGATGCAGATGCTGATGATGAGGACAGTGAAAATGTTTCCGAGGCCGGTGAAGATGTCACTGGCAGTGAGTCAGCTGGTGATGAGTGTTCACAGGGGGAGCATGAGGAGGAAGATGTAGAACGAGATGACGTTGACAGTAAGGCTGAGAGTGAAGGTGAGGCAAAGGGGATGTCTGATGCTCCCTTTGCTTCTGTATATGGGCAGTCTTTGTCATTGTCAGAACAATTCCTATCATCTGTGAAGCCTCTTGTAAAGCACGTACCCCCAATGTTTTGTGGTGAGGAAAGGAGAAGCTCTAGGGTTTTTTATGGAAATGATGATTTCTATGTGCTTTTCAGGCTTCATCAAACTCTTTATGAAAGGGTCGCATCAGCAAAAATCAATTCGATGTCTGCTGAGATGAAACTGAAAACGCCAAAGGATGACAGTGGTCTAGATCCCTACTCCAGATTTATGAGTGCATTGTACAATCTGCTTGATGGATCTGTTGACAATTCTAAGTATGAAGATGAATGCCGAGCAATAATTGGAAATCAGTCATATGTGTTATTTACATTGGTCAAGCTAATATATAAATTGGTGAAACAGCTTCAAGCTGTTTCATCTGATGATACCGACAGCAAGCTTCTTCAACTTTATGAGTATGAGAAGTCACGGAAACCTGGGATGTTAATTGATTCAGTGTACTATGCTAATACACGTATCATCCTCAATGAAGAGAATATCTATCGCTTTGAATGTTCCTGTAGTCCTTGTAAACTCTCGATCCAGATGATGGACAACTTAAATGAGAAGTCAGAGGTGTTTGCTGTTTCTATTGATCCCCATTTTACACATTACTTGTACAATGAGTTTCTGTTGGTCTCTCCTGGCAAAAATGAACACCATGGCATTGTACTGCAAAGAAATAAGTGCAAGTATACTGGCCTGGATGAATTGTCTGCCATGAGCTTGGCTATGGAAGGTGTCCAAGCAGTCAATGGACTGGAGTGTAAGATAGCTTGCAACTCATCCAAGATATCGTATGTTCTAGACACTGAAGATTTCTTCTTTCGTTTGAGAAAAAAGAGAAGATTATCATCAGCAGGCAGCAGTGTCTTGTCCCAGAACCTCAAGGCTAGAGCAGAAAGGTTTCACAGATTCTTAGACAATATCGTAATGAGTTAG 4158 0.4153 MKRTRDDTYVASQLKRPPDSSRGDSYGQSQAPGVGGGGGGGRSGGEATSQKLTTDDALTYLKQVKEMFQDQREKYDTFLEVMKDFKAQRTDTAGVIARVKELFKGHNKLIYGFNTFLPKGYEITLDEDKNPPKKTVEFEEAISFVNKIKKRFQKDEHVYKSFLDILNMYRKEHKDISEVYSEVATLFVDHPDLLDEFTRFLPDTSASPPAYPVSHRHPIQRVNERSSATHTAQQIMDKQRVHRDRLLNSGHDLGVDHPELDNDKTTMKLHKEQRKHAEKDNRDRRNHDMGGRDCDKDDSRDYNLVRFAEKKKLIRTSEGFGGNADFASSDDKDAFTSMYSQAFSFCEKVKERLGSSDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKYPDLMEEFNDFLERCENIDGFLAGVMSKIKKSHMRSSFISESFSDANSSRPVKLEDKEQKRDIDGVKEKERYREKYMAKSIQELDLSNCQRCTPSYRLLPDDYPIAPATQRSELGALVLNDCWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRVEELLNTFKENKINKETAFRIEDHFTGLYKSSLNIRCIERLYGDHGLDVIDILRKNPTLALPVILARLNQKQEEWTKCREDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSMVAEIKEIKEKQQKEDDIVQTIASSNKHTLVPHLEFEYSDVGIHEDLYKLIQYSCQELCSSKEQLSKVMRLWTTFMEPMLGVSHRPYGTESREDRKAGNVMYSTSLNREKENRGPGAVTTAVNAKHKKSAKNEVGSRMLEAENIRNSHDNGDKEKGSTYSDHIHRDDTISSNCHDEKEQNNVSNDPADQLANYNVPFAVNAENIHARTSLEMTAGCSSQHHDAVGKDTSVPRGAMLSSEVRDGFAEAGKVSKLREESSRPFKTEKEEGELSPNGDFGEDNFVGYGDADLAMPKSRQSTERRLYEPRHVGEEDGCQDARGENDADADDEDSENVSEAGEDVTGSESAGDECSQGEHEEEDVERDDVDSKAESEGEAKGMSDAPFASVYGQSLSLSEQFLSSVKPLVKHVPPMFCGEERRSSRVFYGNDDFYVLFRLHQTLYERVASAKINSMSAEMKLKTPKDDSGLDPYSRFMSALYNLLDGSVDNSKYEDECRAIIGNQSYVLFTLVKLIYKLVKQLQAVSSDDTDSKLLQLYEYEKSRKPGMLIDSVYYANTRIILNEENIYRFECSCSPCKLSIQMMDNLNEKSEVFAVSIDPHFTHYLYNEFLLVSPGKNEHHGIVLQRNKCKYTGLDELSAMSLAMEGVQAVNGLECKIACNSSKISYVLDTEDFFFRLRKKRRLSSAGSSVLSQNLKARAERFHRFLDNIVMS* 1386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01027 1385 FunFam Paired amphipathic helix protein Sin3 56 118 - -
Pte6g01027 1385 FunFam Paired amphipathic helix SIN3-like protein 133 204 - -
Pte6g01027 1385 Pfam Paired amphipathic helix repeat 157 201 IPR003822 GO:0006355
Pte6g01027 1385 Pfam Paired amphipathic helix repeat 73 117 IPR003822 GO:0006355
Pte6g01027 1385 Pfam Paired amphipathic helix repeat 357 401 IPR003822 GO:0006355
Pte6g01027 1385 FunFam Paired amphipathic helix protein SIN3 332 406 - -
Pte6g01027 1385 MobiDBLite consensus disorder prediction 780 859 - -
Pte6g01027 1385 MobiDBLite consensus disorder prediction 14 28 - -
Pte6g01027 1385 MobiDBLite consensus disorder prediction 997 1011 - -
Pte6g01027 1385 SUPERFAMILY PAH2 domain 48 119 IPR036600 GO:0006355
Pte6g01027 1385 Pfam Sin3 family co-repressor 479 571 IPR013194 -
Pte6g01027 1385 SMART hdac_interact2seq4b 477 577 IPR013194 -
Pte6g01027 1385 MobiDBLite consensus disorder prediction 923 1057 - -
Pte6g01027 1385 Coils Coil 550 570 - -
Pte6g01027 1385 ProSiteProfiles PAH domain profile. 50 120 IPR003822 GO:0006355
Pte6g01027 1385 Gene3D Paired amphipathic helix 133 205 IPR036600 GO:0006355
Pte6g01027 1385 PANTHER SIN3B-RELATED 50 1243 IPR039774 GO:0003714
Pte6g01027 1385 ProSiteProfiles PAH domain profile. 134 204 IPR003822 GO:0006355
Pte6g01027 1385 Gene3D Paired amphipathic helix 56 118 IPR036600 GO:0006355
Pte6g01027 1385 MobiDBLite consensus disorder prediction 923 948 - -
Pte6g01027 1385 Gene3D Paired amphipathic helix 333 406 IPR036600 GO:0006355
Pte6g01027 1385 MobiDBLite consensus disorder prediction 249 295 - -
Pte6g01027 1385 MobiDBLite consensus disorder prediction 818 858 - -
Pte6g01027 1385 Pfam C-terminal domain of Sin3a protein 1099 1347 IPR031693 -
Pte6g01027 1385 ProSiteProfiles PAH domain profile. 335 404 IPR003822 GO:0006355
Pte6g01027 1385 MobiDBLite consensus disorder prediction 969 996 - -
Pte6g01027 1385 SUPERFAMILY PAH2 domain 339 404 IPR036600 GO:0006355
Pte6g01027 1385 MobiDBLite consensus disorder prediction 1 50 - -
Pte6g01027 1385 MobiDBLite consensus disorder prediction 1027 1041 - -
Pte6g01027 1385 SUPERFAMILY PAH2 domain 131 203 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01027 Pte-Chr6 28193821 28204231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01027 39 153 WRKY Transcription Factor Family AT4G12020 50.862 2.23e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte6g01027 Sin3a_C 5e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01027 K11644 - cave:132181355 1697.95