Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01018 ATGGTTTGCATTATTTGTGGGATGTCTGAAAGCAAAGATGGTAGGTGGTTTTCGGATCATACCCATATAAAAATGTCTTGGATAGGATATCAGTTACAACGAAAAGATGGTTATGTGAGCTACCCACCGCCTCTGCCTCCTACATCTTCATATGCAAACGCTGGTGATTTCCCCAACCAACCCATTCATTCTACATCTATTACTAGAATTAGTCCAGCTGTTCTTTTCATCATAGTGATTCTAGCAGTGCTGTTATTCATTTCTGGTCTGCTTCATCTTCTTGTAAGATTTTTATTGAAGCGCCAATCGTCTGCAGAATCTTCTCCATCGAATAGGTATCCTGAAATTTCTACCTCCGATGCACTTCAGAGGCAGCTGCAACAGTTATTTTACACCCTTGAATCTGGTTTGGATCAAGCTTTAATTGATGCGCTTCCTGTTTTTCAGTATAAAGAGATAGTTGGCGCTCAAGAGCCATTTGATTGTGCTGTTTGTCTGTGTGAGTTTACTGAGAAGGACAAGCTGAGATTGCTTCCCACGTGCAGCCATGCTTTTCACATCAATTGTATAGACACTTGGCTACTATCAAACTCAACATGTCCTCTTTGTAGAGACTCCATCTTCAGACCTGAGTTTTCTATGGAGAACCCGATTTTCGAATTTCATGATTTTAGAGAGGAAGATGAGTGTCCTGTAAATGGAGAGAATGGATTTCCTTCCATACAAAAAACTGTTGAAATGGGAGAGCTTGTTGTTCGAAAAGGTGTTTTACCAGTTAGACTCGGTAAGTTTCGAAAATTGAATGAGGAAAAGGAGGATGTTGAAGGAGAGACTAGCAGCAGTAAGTTAGATGCAAGAAGGTGCTTCTCAATGGGGTCTTACCAATATGTTTTAGGGAATTTAGACCTAAGAATCACTTTGAACCGTGATAGGCAGGGTTGTGATAAGAAGCCTACAGATGGGACAGAAAAAACCGAGAATGAAAGTGATGGAGAAGCCAAGAAGATTGGTAGTGTAACTAAAGGCGAGAGCTTTTCTGTGTCAAAAATATGGTTGTGTCTAAGAAGGGCAAATTTCCAGTTCTTCAGATGA 1092 0.4048 MVCIICGMSESKDGRWFSDHTHIKMSWIGYQLQRKDGYVSYPPPLPPTSSYANAGDFPNQPIHSTSITRISPAVLFIIVILAVLLFISGLLHLLVRFLLKRQSSAESSPSNRYPEISTSDALQRQLQQLFYTLESGLDQALIDALPVFQYKEIVGAQEPFDCAVCLCEFTEKDKLRLLPTCSHAFHINCIDTWLLSNSTCPLCRDSIFRPEFSMENPIFEFHDFREEDECPVNGENGFPSIQKTVEMGELVVRKGVLPVRLGKFRKLNEEKEDVEGETSSSKLDARRCFSMGSYQYVLGNLDLRITLNRDRQGCDKKPTDGTEKTENESDGEAKKIGSVTKGESFSVSKIWLCLRRANFQFFR* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01018 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 66 351 - -
Pte6g01018 363 SUPERFAMILY RING/U-box 141 212 - -
Pte6g01018 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 210 IPR013083 -
Pte6g01018 363 MobiDBLite consensus disorder prediction 312 335 - -
Pte6g01018 363 CDD RING-H2_EL5-like 161 204 - -
Pte6g01018 363 Pfam Ring finger domain 161 204 IPR001841 -
Pte6g01018 363 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Pte6g01018 363 SMART ring_2 162 203 IPR001841 -
Pte6g01018 363 FunFam RING-H2 finger protein ATL46-like 137 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01018 Pte-Chr6 28104026 28105711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01018 68 352 C3H Transcription Factor Family AT2G18650 41.433 2.11e-56 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01018 - - tcc:18600728 466.463