Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01003 ATGTTGGCAATTCTTGTAGTGGCTTCTCTTGTTCCAAATCTTTGTGCAGCCAAACAATCTAAGATTACTGGCATGCGCTTGAATCAGATTGATAAATGTTGGAGATGGAACCCAGATTGGAGGGAAGATCGTTCCCAGCTGGCCATGTGCTCAGTTGGTTATGCTGGGAAGATGACTCACAACGTTGGGGCTGACCTCACATATTACACAGTCACCGATCCTACTGATAACCCAATGAACCCAACGCCTGGTACCCTCAGATATGGAGTTACCATGATCAAAGGTAAGAAATGGATCTTTTTCCAGACAGACATGACCATCAAACTTGAGAAACCCCTTCTCATCAGTAGTTTCACCGCCATAGATGGCAGAGGCGTCAATGTTCACATTGTTGGCAATGCATGTTTGACTGTCTTCAAGGCAAGCAATATAATAATCCATAGCCTTCGCATTCATCACTGTAAGGCTCAACCACCCAGTTTAGTGATGGGTCCTAATGGCCGAAAGGTGAGCCTTGGGCCAGTGGACGGAGATGCTATCAGGTTGGTGACTGCATCAAAAGTCTGGATTGACCATAACACTCTATATGAGTGCGAAGATGGGCTTCTTGATGTGACTCGTGGTTCCACAAATATCACCATATCAAACAACTGGTTCAGACACCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGATTCCTGCGTGACAAAAACATGAAGGTGACTGTAGTGTACAACCATTTTGGACCTAATTGCAACCAACGTATGCCAAGGGTTCGTCATGGATATGCACACGTAACTAATAACCTGTACCAAGGTTGGCAGAACTACGCCATTGGTGGAAGCATGAGTCCTAGCATTAAAAGTGAAGCCAATCTTTTCATTGCACCCAAATCAGGAAGCAAGGAGGTTACATGGAGAAATGGGGATAAGGAAGATGTAGGTTCCTGGAAATTTTACTCAGTGGGGGATGTCTTTGAGAATGGTGCTGTGTTCGACATTCAATCGGGTGTGGGTGGTGCAAAGCCTAACTATACCGAAGAACAGCGTTTTATAGTTACAGATGCTCGACAGCTGAAGTTACTGACAAGTTCATCTGGAGCTTTACGATGCACCAAAACATCTGTATGCTGA 1137 0.4485 MLAILVVASLVPNLCAAKQSKITGMRLNQIDKCWRWNPDWREDRSQLAMCSVGYAGKMTHNVGADLTYYTVTDPTDNPMNPTPGTLRYGVTMIKGKKWIFFQTDMTIKLEKPLLISSFTAIDGRGVNVHIVGNACLTVFKASNIIIHSLRIHHCKAQPPSLVMGPNGRKVSLGPVDGDAIRLVTASKVWIDHNTLYECEDGLLDVTRGSTNITISNNWFRHQDKVMLLGHDDGFLRDKNMKVTVVYNHFGPNCNQRMPRVRHGYAHVTNNLYQGWQNYAIGGSMSPSIKSEANLFIAPKSGSKEVTWRNGDKEDVGSWKFYSVGDVFENGAVFDIQSGVGGAKPNYTEEQRFIVTDARQLKLLTSSSGALRCTKTSVC* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01003 378 Pfam Pectate lyase 120 295 IPR002022 -
Pte6g01003 378 PRINTS Pollen allergen Amb family signature 112 128 IPR018082 -
Pte6g01003 378 PRINTS Pollen allergen Amb family signature 176 197 IPR018082 -
Pte6g01003 378 PRINTS Pollen allergen Amb family signature 75 100 IPR018082 -
Pte6g01003 378 PRINTS Pollen allergen Amb family signature 349 372 IPR018082 -
Pte6g01003 378 PRINTS Pollen allergen Amb family signature 278 297 IPR018082 -
Pte6g01003 378 PRINTS Pollen allergen Amb family signature 256 275 IPR018082 -
Pte6g01003 378 PRINTS Pollen allergen Amb family signature 318 342 IPR018082 -
Pte6g01003 378 SUPERFAMILY Pectin lyase-like 51 334 IPR011050 -
Pte6g01003 378 SMART amb_all 104 301 IPR002022 -
Pte6g01003 378 Gene3D - 27 371 IPR012334 -
Pte6g01003 378 PANTHER PECTATE LYASE 18-RELATED 24 375 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01003 Pte-Chr6 27885046 27886776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01003 58 310 Polysaccharide Lyase AT5G09280 72.332 2.91e-144 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01003 K01728 - qsu:112015873 588.186