Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00997 ATGGCTGCAACTGCTTCTGCTGGTCCACGATATGCACCACCAGACCCTACCCTTCCAAAGCCTTGGAAAGGTCTTGTTGATGGGAAAACTGGTTATTTGTACTTTTGGAACCCAGAGACTAATGTTACCCAGTACGAGAGGCCTACAAGCTCCTTTCCTACACCAAAGCCTTCTTCTGCAGCTATAAGTTCCGTTCAAGATCAAAAACAGTCATCTCAAGGAAATAAGGATGACAGAAGCAACAGTGCCGGATCAAATTATGAGGCAGGAAATAGAAATTATCAGTGTGCAAAAGGTGGAAATATTCATTCCCAGAATATTCCAACTGTGACCGCTTCTGATGGTGGTGCAATTAGAGCCCATATAGATGCAGGAAATGGATTGTCTGGAGATGCATTTCGCCGTCGACATGAGATCACTATCAATGGAGACAATGTGCCTTTACCTTTTACCTCATTTGAGTCTACTGGCTTCCCTTCTGAGCTTCTTAGAGAGGTACAAAATGCTGGGTTCTCTGCCCCTACTCCCATTCAGGCACAGTCGTGGCCAATTGCACTCGAAAGTAGAGATATTGTAGCTGTTGCTAAAACTGGTTCTGGGAAAACTTTAGGGTATTTGATACCAGGGTTTATTCACCTCAAGCGGTCACAGAAGGACTCCAGATTAGGTCCAACTGTCTTGGTATTGTCCCCAACTAGGGAATTGGCAACACAGATACAAGAGGAAGCTTTGAAGTTTGGGCGCTCATCAAGAATCAGCTGCACTTGTTTGTATGGTGGAGCACCAAAAGGTCCTCAATTAAGAGATTTAGACCGAGGAGCAGATATTGTTGTTGCCACTCCTGGTCGTCTGAATGACATTATCGAGATGCGAAGAATTAGTCTCCATCAAGTCTCCTACCTTGTACTTGATGAGGCTGATAGGATGCTGGATATGGGCTTTGAACCTCAAATAAGGAAGATAGTGAATGAGGTTCCTGCTCGACGTCAAACCTTGATGTTCACTGCAACATGGCCTAAAGAGGTTAGACAAATTGCAGCTGATCTACTGGTCAGTCCTGTGCAGGTTAACATTGGCAATGTGGATGAGCTGGTTGCCAACAAGTCTATCACTCAGCATATTGAAGTATTGGCACCTATGGAGAAACATAGGCGCTTGGAGCAGATACTGCGCTCACAAGAACCAGGATCTAAAATAATTATATTCTGTTCTACGAAAAAGATGTGTGATCAGCTTACCCGTAACCTTACTCGGCAGTTTGGAGCTGCAGCTATACATGGAGATAAATCTCAGGCCGAGAGGGATCATGTTCTAAGTCAGTTTCGCACTGGGAGGTCGCCCATACTGGTAGCTACTGATGTTGCTGCTCGAGGCCTGGACATCAAAGATATCAGAGTGGTAGTCAATTATGACTTCCCTACAGGCGTGGAGGATTATGTGCATAGGATTGGAAGAACTGGCAGGGCAGGAGCAACAGGGTTGGCTTTCACATTCTTTGGAGACCAGGATGCCAAATATGCCTCAGATCTGATAAAAGTTTTGGAAGGTGCAAACCAGCATGTCCCTCCAGAAATCCGTGAGATGGCATCTCGTGGTGGAGGGATGAACAGATTCAGGAGATGGGGTTCGGGCGGTCGTGATGGCGGTCGTGGTGGCCGTAGTGATTCTGGGTATGGTGGACGTGGTGGTTATGGAATCTCTCCTTTCAATAGGCCAGACCGAAGTGGTGGTCATGGATATGACTATGATTCTCGAGACAGGTACGTACGTGGTAGAAGCCCTGGTAAAGAACCTAATTGGGGTGGTAATAACAAAAGCTTTGGCCGTGAACGTAGCCGTTCACCGCCACCCAGTTTCCACAAGGCCATGATGGAACGGACTCACGACAAAGGTGTTAATGGTAGGGAAGAAAAAAGTTTTACATATTCACAGGGTGGTGGAAGGGAAGACTACTGGAAGCCCCAACGAGGAGAGGGCGTGATAGATGAAGGCATTGCAACTCAAGTTGAAGATGGATGGAAGTGA 2025 0.4647 MAATASAGPRYAPPDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPTSSFPTPKPSSAAISSVQDQKQSSQGNKDDRSNSAGSNYEAGNRNYQCAKGGNIHSQNIPTVTASDGGAIRAHIDAGNGLSGDAFRRRHEITINGDNVPLPFTSFESTGFPSELLREVQNAGFSAPTPIQAQSWPIALESRDIVAVAKTGSGKTLGYLIPGFIHLKRSQKDSRLGPTVLVLSPTRELATQIQEEALKFGRSSRISCTCLYGGAPKGPQLRDLDRGADIVVATPGRLNDIIEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMFTATWPKEVRQIAADLLVSPVQVNIGNVDELVANKSITQHIEVLAPMEKHRRLEQILRSQEPGSKIIIFCSTKKMCDQLTRNLTRQFGAAAIHGDKSQAERDHVLSQFRTGRSPILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAFTFFGDQDAKYASDLIKVLEGANQHVPPEIREMASRGGGMNRFRRWGSGGRDGGRGGRSDSGYGGRGGYGISPFNRPDRSGGHGYDYDSRDRYVRGRSPGKEPNWGGNNKSFGRERSRSPPPSFHKAMMERTHDKGVNGREEKSFTYSQGGGREDYWKPQRGEGVIDEGIATQVEDGWK* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00997 674 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Pte6g00997 674 Gene3D - 14 69 - -
Pte6g00997 674 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 385 529 IPR001650 -
Pte6g00997 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 507 IPR027417 -
Pte6g00997 674 Gene3D - 129 360 IPR027417 -
Pte6g00997 674 SMART ultradead3 170 373 IPR014001 -
Pte6g00997 674 MobiDBLite consensus disorder prediction 44 100 - -
Pte6g00997 674 MobiDBLite consensus disorder prediction 622 636 - -
Pte6g00997 674 FunFam ATP-dependent RNA helicase RhlB 360 532 - -
Pte6g00997 674 CDD WW 19 49 IPR001202 GO:0005515
Pte6g00997 674 MobiDBLite consensus disorder prediction 1 23 - -
Pte6g00997 674 Pfam WW domain 18 48 IPR001202 GO:0005515
Pte6g00997 674 CDD SF2_C_DEAD 370 499 - -
Pte6g00997 674 SMART helicmild6 410 490 IPR001650 -
Pte6g00997 674 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 302 310 IPR000629 -
Pte6g00997 674 SUPERFAMILY WW domain 10 49 IPR036020 GO:0005515
Pte6g00997 674 MobiDBLite consensus disorder prediction 526 659 - -
Pte6g00997 674 ProSiteProfiles WW/rsp5/WWP domain profile. 16 50 IPR001202 GO:0005515
Pte6g00997 674 ProSitePatterns WW/rsp5/WWP domain signature. 22 48 IPR001202 GO:0005515
Pte6g00997 674 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 356 IPR014001 -
Pte6g00997 674 MobiDBLite consensus disorder prediction 576 593 - -
Pte6g00997 674 Pfam DEAD/DEAH box helicase 175 344 IPR011545 GO:0003676|GO:0005524
Pte6g00997 674 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 83 529 - -
Pte6g00997 674 Gene3D - 361 532 IPR027417 -
Pte6g00997 674 FunFam probable ATP-dependent RNA helicase DDX17 126 359 - -
Pte6g00997 674 SMART ww_5 17 50 IPR001202 GO:0005515
Pte6g00997 674 Pfam Helicase conserved C-terminal domain 382 490 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00997 Pte-Chr6 27769804 27776073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00997 149 528 Eukaryotic Initiation Factors Gene Family AT3G19760 34.726 5.99e-67 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00997 K12823 - qsa:O6P43_008943 929.087