Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00978 ATGAGTCCTGCTAAGAAAGGGTGTGTCAAGATTGTGGAAGCAGAGCAAAAGGCTGCAGATACGACAAAATGCAGGACTTGTTGTAAAGGCCGTGGGTACGATTGTAATGCTCATGTGAAAAGCAGTTGGGTCCCGGCGGAGAAAGTTCAGATTCTTGGAATGCAAACTTCAAGCAGCGTCTACCAGGTCAAGTGCGAGCCCCACATTCAAGTGCCAAGAGTCAGTGCAGTGGGGGATGGTGAAGATGAATTAGCTTACATGGCTACAGTACACATTGGTGGTCACGTATTCAAGGGTTTTCTCTATTGTCACGGAGTTGATACGAGAAACTCAGTTCCATGTATGTCCCAACTGATTTTGGAAGGCAATATCTTTGGAAAAAACAAGTTATCTTCACCGACTTTGCCCTTGGCTCCAGCTAATGCTTACACTGTTTCTGGTAGCTGA 447 0.4586 MSPAKKGCVKIVEAEQKAADTTKCRTCCKGRGYDCNAHVKSSWVPAEKVQILGMQTSSSVYQVKCEPHIQVPRVSAVGDGEDELAYMATVHIGGHVFKGFLYCHGVDTRNSVPCMSQLILEGNIFGKNKLSSPTLPLAPANAYTVSGS* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00978 148 NCBIfam putative zinc finger domain, LRP1 type 17 48 IPR006510 -
Pte6g00978 148 NCBIfam LRP1 C-terminal domain 71 106 IPR006511 -
Pte6g00978 148 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 62 123 IPR007818 GO:0003700|GO:0006355
Pte6g00978 148 Pfam Domain of unknown function (DUF702) 61 107 - -
Pte6g00978 148 Pfam Domain of unknown function (DUF702) 12 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00978 Pte-Chr6 27454391 27454985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00978 23 141 C2H2 Transcription Factor Family AT5G12330 34.078 1.99e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pte6g00978 DUF702 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00978 - - gmx:100806835 116.316