Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00971 ATGGAAGAGCCCGACTTCTCTGATCACAAGCTCTGTGGTTACCTATGTACGGTGCTCGCAGTTACTTCTTTGGAACCGAACGTACACGAGACTATCGGTATTGGTACAAGATGTGAGGTCGTCGGAGAGGGTAATGAAGTAAGTTTCAGGTGCGAAACCGGCGCCACTTTCAGTCCGGTTAAGTTATCGGCGGAGGCAGAGGTGGAGTCCCGTTTGGAGAATGTGAATGGTGATGGCGGTGGTGAAAGCAGTGCAGGTTCAAGGAAGAAGAGGATGAGTAGGTTGGGAATGGTGAAAGGGAGTATGAGCGTGGTTAATCAGATTTATGCTTTGGTGAATCGGAAGTGTTTATTGATTGACGCTCGTGTGATTTGCTTTGAGTTTAAGGAAGGTAGTTGTGGCGAGCTGAGAGTGGTAGTGTTGGTTGATGTGTATCTTCCGATTGCTGTGTGGAGTGGTTGGCAATTTCCGAGGTCTGCCTCAATAGCTGGAGCCCTTTTGACGCATTTGAGCTGTGATTGGAATGAGAGGTCACTTCTTTCTGGTGCTGATTATTGCAAAAGGAGTGGAGGAGTTCATGCTAGCATTTGGAATGTTTCTGATTGTCATGTCCTTGGTTGCAAACTTCATCAAAACGTAGCTGATGCTTCCAGGAAAAAGCTGTTCAGACTACATGAAATTTTTAGGAGTCTACCTGCTGAGAGTAAGCAAGTGAAGTCCGAGAGTTCAAAGATAAAACCCATGGATGAATCCTCTGGATGTGGTATATGGGAGATTTCAGATGACATCCTGGCTAACATTTTGGGTTCCCTTCGCCCTATTGATCTTGTTAGAGTTGCCGCTACTTGTCAACATCTACGATCTTTGGCTGTTTCAGTTATGCCTTGTATGAAGCTTAAACTCTTTCCTCATCAGCAGACAGCTATAGAGTGGATGTTGCAACGTGAGAGAAATGTTAAAGTCCTTCCTCATCCTTTATTTGTGACTCTTTCAACTGAAGATGGTTTCGTTTTCCATGTAAATAGTGTATCGGGTGAAATACTCACTGGCATGGCTCCTACAATAAAAGATTTCCGTGGAGGAATGTTTTGTGATGAACCGGGTTTGGGTAAGACTGTTACTGCCCTTTCTCTTATTTTGAAGACTCAAGGTACATTAGCAGACCCGCCTAATGGGGTTCAAGTGATTTGGTGTCAGGGGAATGGGGATCGGAGATGTGGCTATTATGAGCTGAGCAGTAAAAATGCTTACAATGGAAATAGTATATTGGGAAAAAGAGATTCATGCACGAATGGTGGTACAAACATAGCGGATTATAGATACTCATCTCCTAAAAGATCCAGGGTGATTATTGATCAGGGCTCTGGATTTAATGATTCATGTTCTACAATGGTGAAGAAATCACCTGAAGATGCAACACCCATGAATCCCATTCGATGCAGGAGAAGCATGAGCAACATAAAAAATAATCTATCCTCCAATTTTGAAGGAAAATCTCAGGTTTCGATTCAAAGAAAAGTGGGTGGCACATCTACTGATAGAGAAAGTAAAGTACGAGAAAAAATTCAGAATAAAGCTCCAGATGTAGCTGATCACTTTGAGTTAAATGATACCTGGGTTCAATGTGATGCTTGTCACAAATGGCGCAGGCTCGAAGAAACTGGTATATCTAATGCTAGTGCAGCCTGGTTTTGTAGAATGAATACGGACCCTCTTTATCAGAGTTGCAAAGCTCCTGAAGAAGCCTGGCATGATTGCTCTTCAATAACATATTTACCTGGATTCCATACTAAAGGAACTTCTGGTGGTGATGATCAAAACGTACTGTTTTTTACCAGTGTGCTTAAGGAACATTACATTTTGATAAATAATGAAACAAAAAAGGCCCTGAAATGGTTGGCTCAAGTTTCCCCGGAAATACTTGCTCAGATGGAAACCACTGGGTTAAGAAGTCCCTTTGTTAGTCCTAGCTCAGGTTTGGATGTCAAAGGATTCCACAGAATATTTGAAGCATTTTCCCTTGTAAAGCGAGTAGAAAAAGGTGTATGCAGATGGTTTTACCCAAGAAATATCAAGAATTTGGCTTTTGATTTGGCTGCTCTTAGAATGGCTTTGAGTGAGCCATTGGATTCTGTTAGGTTTTACCTTTCAAGAGCTACATTGATTGTAGTCCCATCAAATCTAGTTGATCACTGGAAAACACAAATTGAAAAGCATGTATCGTCCAATCAGTTGCATATATATGTTTGGACTGATCATAAAAAGCCTTCTGCACACTCACTAGCTTGGGATTATGATGTTGTCATCACTACTTTTAGTCGCTTAAGTGCAGAGTGGAGGCCCCATCGTAAAAGTTCTCTGATGGAAGTCCATTGGCTTAGGATCATGTTAGATGAAGGGCATACACTTGGATCTAGTCTTAGTTTAACTAACAAATTGCAAATGACAATTTCCTTGATAGCTTCAAACCGCTGGATATTAACGGGAACTCCAACTCCTAATACTCCTAACAGCCAACTATCACATCTACAACCATTGCTCAAGTTCCTTCATGAGGAAGCTTATGGAAAAAATCAGAAGTCATGGGAAACTGGTATTCTTAAGCCATTTGAGTCAGAAATGGATGAGGGAAGATCTCGCTTATTGCATTTACTTCACAGGTGCATGATCAGTGCAAGAAAGTCAGATTTATTATCTATTCCACCCTGCATCAAGAATGTAGTTTTTGTTAATTTTACTGAGGAACATGCACGTAGTTACAATGAATTGGTACTTACAGTTCGCCGCAATATATTAATGGCTGACTGGAATGATCCTTCACATGTTGAGAGCCTTCTGAATCCAAAACAATGGAAGTTTCGGGGTGCAACTATAAAAAATGTCAGGCTTTCTTGCTGTGTTGCTGGCCATATTAAAGTTACACATGCTGGTGAAGATATTCAGGAAACAATGGATATTTTGGTTGGAAATGGCCTTGTTCCCGCTTCAGAAGAGTATGCCTCTATAAGATACAGTCTAGTTTTTGGTGGCAAGTGTGCCAGGTGTGCTGAATGGTGCCGTTTACCAGTCATTACACCCTGTAGACATCTTCTATGCCTTGATTGTGTGTCTTTGGACAGTACCAAGTGTACTTACCCTGGCTGTGGATATTTATATGAGATGCAAAATCCTGATGTGCTAACCCGTCCTGAGAATCCTAATCCAAAATGGCCTGTACCCAAAGATCTTATTGAGTTACAGCCTTCCTATAAACAGGATAATTGGGATCCTGATTGGCAATCGACATCCAGTAGCAAGGTTTCTTATTTAGTACAACAATTGAAAGCTTTGGAGGAAGCTAACAGAGAGGCAGGACTCGATCTTTATGATTGCAGTGATATGAAGCATGCTGTAGAGTTTGGCCCCTCACTTAAAAGTGATACAGAAGAGTTAATCCAGAACTTCTCCGGGATAAACACTTCAGCCAATGGTTTGAAACCTGAGAAAGTTTTAATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTAACAATTGCCGGCACGAAATTTGCTAGGATGTATAGTCCCATGCATTCTATTGAAAAGAAGAAGTCATTATCGGTTTTCCAGCATGACTCAAGTTGTATGGCACTTCTTATGGACGGAAGTGCTGCATTAGGACTTGACCTGAGTTTTGTCACACGCGTGTTTTTAATGGAACCTATCTGGGACAGAAGCATGGAGGAACAAGTCATCAGTCGTGCTCACCGAATGGGTGCCACTCGCCCTATTTATGTGGAAACATTAGCAATGCGTGGTACAATAGAGGAGCAAATGCTAGAATTTTTACAGGATGGTGAGCTACGTACAAGATTGTTGAATGATGATTGCAGAAAGTCTGACAATGAAGGTGGTCGAGGGTATCGGTCATTGCATGATTTTGCTGAGAATAGTTATTTGTCAAAGCTAAGCTTTGTGCACTCTGGTTCTACACGCTAG 3990 0.4153 MEEPDFSDHKLCGYLCTVLAVTSLEPNVHETIGIGTRCEVVGEGNEVSFRCETGATFSPVKLSAEAEVESRLENVNGDGGGESSAGSRKKRMSRLGMVKGSMSVVNQIYALVNRKCLLIDARVICFEFKEGSCGELRVVVLVDVYLPIAVWSGWQFPRSASIAGALLTHLSCDWNERSLLSGADYCKRSGGVHASIWNVSDCHVLGCKLHQNVADASRKKLFRLHEIFRSLPAESKQVKSESSKIKPMDESSGCGIWEISDDILANILGSLRPIDLVRVAATCQHLRSLAVSVMPCMKLKLFPHQQTAIEWMLQRERNVKVLPHPLFVTLSTEDGFVFHVNSVSGEILTGMAPTIKDFRGGMFCDEPGLGKTVTALSLILKTQGTLADPPNGVQVIWCQGNGDRRCGYYELSSKNAYNGNSILGKRDSCTNGGTNIADYRYSSPKRSRVIIDQGSGFNDSCSTMVKKSPEDATPMNPIRCRRSMSNIKNNLSSNFEGKSQVSIQRKVGGTSTDRESKVREKIQNKAPDVADHFELNDTWVQCDACHKWRRLEETGISNASAAWFCRMNTDPLYQSCKAPEEAWHDCSSITYLPGFHTKGTSGGDDQNVLFFTSVLKEHYILINNETKKALKWLAQVSPEILAQMETTGLRSPFVSPSSGLDVKGFHRIFEAFSLVKRVEKGVCRWFYPRNIKNLAFDLAALRMALSEPLDSVRFYLSRATLIVVPSNLVDHWKTQIEKHVSSNQLHIYVWTDHKKPSAHSLAWDYDVVITTFSRLSAEWRPHRKSSLMEVHWLRIMLDEGHTLGSSLSLTNKLQMTISLIASNRWILTGTPTPNTPNSQLSHLQPLLKFLHEEAYGKNQKSWETGILKPFESEMDEGRSRLLHLLHRCMISARKSDLLSIPPCIKNVVFVNFTEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRGATIKNVRLSCCVAGHIKVTHAGEDIQETMDILVGNGLVPASEEYASIRYSLVFGGKCARCAEWCRLPVITPCRHLLCLDCVSLDSTKCTYPGCGYLYEMQNPDVLTRPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSSKVSYLVQQLKALEEANREAGLDLYDCSDMKHAVEFGPSLKSDTEELIQNFSGINTSANGLKPEKVLIFSQFLEHIHVIEQQLTIAGTKFARMYSPMHSIEKKKSLSVFQHDSSCMALLMDGSAALGLDLSFVTRVFLMEPIWDRSMEEQVISRAHRMGATRPIYVETLAMRGTIEEQMLEFLQDGELRTRLLNDDCRKSDNEGGRGYRSLHDFAENSYLSKLSFVHSGSTR* 1330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00971 1329 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 120 1281 - -
Pte6g00971 1329 MobiDBLite consensus disorder prediction 498 518 - -
Pte6g00971 1329 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1143 1291 IPR001650 -
Pte6g00971 1329 Gene3D - 700 893 IPR038718 -
Pte6g00971 1329 CDD DEXDc_SHPRH-like 715 890 - -
Pte6g00971 1329 Gene3D - 1054 1312 IPR027417 -
Pte6g00971 1329 SUPERFAMILY F-box domain 249 292 IPR036047 GO:0005515
Pte6g00971 1329 ProSitePatterns Zinc finger RING-type signature. 1027 1036 IPR017907 -
Pte6g00971 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 382 IPR027417 -
Pte6g00971 1329 ProSiteProfiles Zinc finger CW-type profile. 533 584 IPR011124 GO:0008270
Pte6g00971 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 717 879 IPR027417 -
Pte6g00971 1329 CDD F-box_SF 258 290 - -
Pte6g00971 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 897 1293 IPR027417 -
Pte6g00971 1329 Pfam CW-type Zinc Finger 538 581 IPR011124 GO:0008270
Pte6g00971 1329 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 692 849 IPR014001 -
Pte6g00971 1329 Pfam SNF2-related domain 304 947 IPR000330 GO:0005524|GO:0140658
Pte6g00971 1329 SMART helicmild6 1174 1256 IPR001650 -
Pte6g00971 1329 SMART ultradead3 297 860 IPR014001 -
Pte6g00971 1329 Pfam Helicase conserved C-terminal domain 1159 1256 IPR001650 -
Pte6g00971 1329 Gene3D - 525 586 - -
Pte6g00971 1329 CDD SF2_C_SNF 1159 1266 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00971 300 380 RAD5 or RAD16-like Gene Family AT5G22750 32.955 1.58e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte6g00971 SNF2_N 1.8e-96 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00971 - - vvi:100254946 1774.6