Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00967 ATGGATCCACAAGAAAGGCTAGAAAGTCTGAGTCGTCAATCTGGGAATAGGTTTTGTGCTGATTGTGGATCACCAGATCCAAAATGGGTATCATCAAGCCTCGGAGTTTTCATATGCATCAAGTGCTCTGGTGTACATAGAAGTCTTGGAGTGCATGTATCTAAGGTTTTCTCAGTGAAGCTAGATGAATGGAAAGAAGAAGAAGTTGACACTCTAGTAAAGCTTGGTGGAAATAATTTGCTGAATAAAAAATATGAAGCTTGCATTCCAAAGAACATTACGAAACCAAATCCAAACTCTACCAACGAGGAGCGCTCAGATTTTATTAGGAGAAAATATGAGCAGCTACAGTTTCTGGGAAATGACAACATGTCTCTCTCATTCCAGTCATCTGATGATGCAATGGCTTGTCCATTAAATCCAAATAGAAGACATTCATCCTCTCACGGCAGTTCTTCAGCAAATCATTATGCATTCGATAAGAAAATATTTGAGCATGCCACCAAAAGTCGCATTGGACAGGCACTTCGCAGTAGTTGGGTGAAAAAAGAGCCAGATCCAAAGGTTACCAAAAAGAGCCACACACTGGCAGGCATGATCGAATTTGTTGGACTGATTAAAGTTCATGTGCTTCGAGGCACCAACCTGGCTGTCAGAGATGTGAAGAGCAGTGACCCTTATGTCGTCATTGCTATTGGTCAACAGTCAGTGAAGACAAAGGTGATAAAGAACTGTTTAAACCCTGTATGGAACGAAAACCTAATGCTCTCAATACCTGAGGAAATTCCTCCTCTGAAAGTGTCTGTGTATGACAAAGACAAGTTCTCTCATGACGACTTCATGGGTGAGGCTGAGATAGACATACAGCCCTTGCTGGATGCTGCTAAGGCTTGTGAGAAATTCGACATACGAGAGACAGCAGAACTTGAGAAGTGGTTAGAAAGCAGAGAGAACAACCAATTCATAGATGGTATCCTCAAGATAGTCGATGGAAAGGTTAGACAGGAAACTTGGGTGATGCTGCAGAATGTTGAGAGGGGTTGTATAGAGATTGAGCTCGAGTGTGTTCCTCTAACTCAATAG 1083 0.4211 MDPQERLESLSRQSGNRFCADCGSPDPKWVSSSLGVFICIKCSGVHRSLGVHVSKVFSVKLDEWKEEEVDTLVKLGGNNLLNKKYEACIPKNITKPNPNSTNEERSDFIRRKYEQLQFLGNDNMSLSFQSSDDAMACPLNPNRRHSSSHGSSSANHYAFDKKIFEHATKSRIGQALRSSWVKKEPDPKVTKKSHTLAGMIEFVGLIKVHVLRGTNLAVRDVKSSDPYVVIAIGQQSVKTKVIKNCLNPVWNENLMLSIPEEIPPLKVSVYDKDKFSHDDFMGEAEIDIQPLLDAAKACEKFDIRETAELEKWLESRENNQFIDGILKIVDGKVRQETWVMLQNVERGCIEIELECVPLTQ* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00967 360 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Pte6g00967 360 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Pte6g00967 360 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Pte6g00967 360 Gene3D C2 domain 203 360 IPR035892 -
Pte6g00967 360 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 126 IPR001164 GO:0005096
Pte6g00967 360 ProSiteProfiles C2 domain profile. 185 301 IPR000008 -
Pte6g00967 360 SMART C2_3c 205 300 IPR000008 -
Pte6g00967 360 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 3 360 IPR044518 GO:0005096|GO:0005543
Pte6g00967 360 FunFam stromal membrane-associated protein 1 isoform X1 1 124 - -
Pte6g00967 360 Pfam Putative GTPase activating protein for Arf 5 119 IPR001164 GO:0005096
Pte6g00967 360 Gene3D Arf GTPase activating protein 1 126 IPR038508 -
Pte6g00967 360 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 203 298 IPR035892 -
Pte6g00967 360 SUPERFAMILY ArfGap/RecO-like zinc finger 4 119 IPR037278 -
Pte6g00967 360 CDD ArfGap 7 113 - -
Pte6g00967 360 SMART arf_gap_3 4 126 IPR001164 GO:0005096
Pte6g00967 360 CDD C2_ArfGAP 203 347 - -
Pte6g00967 360 Pfam C2 domain 205 301 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00967 Pte-Chr6 27241724 27246884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00967 4 361 C2H2 Transcription Factor Family AT4G21160 45.810 2.17e-110 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00967 K12486 - qsa:O6P43_029685 468.003