Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00956 ATGAAATCTGAAGACCGGCGCAGGTGTTTATACAATCTGTTATCAGCATGCACCAGCCACATCGTATCTGGCTGCATAAAGGATGCAGACAAAGACCTTGACTGCATATCTACACTTGCATCCATTGATGGCGACTCGATGCAACGGATGGCTGCTTATTTCAATGAAGCTCTTGGTTACAAAGTTGTAAAACATTTGCCTGGTGCGTTCAGTGCCCTCAACTCAACAAAAGTACCGTCTGTTTCAGATGAACTTGTTGCTAAAAAATGCTTCCATAAGTTATGTCCTTTTCTAAAGCTTGCATATGAGATCACGAACCGGGCCATTATTGAAGCAATGGAAGGGGAGAAGTTAGTTCACATCATTGATTTCAATTGCTTTGAACCTACTCAGTGGATTGATCTCTTGCGCAGTTTCAGCCAACATCCAGAAGGAGCACCCCACATCCGAATTACTGGTGTTCATCAACAGAAAGTTGTTCTGGATCATATGTCTGCTCTTTTGACAGAAGTAGCTGAAGACTTGGCCATCCCTTTTCAATTCAATCAAGTGGTTGGCACGTTAGAGGATGTGGATACCGATCGTTTGGGTGTCAGGTTAGGAGAAGCTCTTGCAGTGAGTTGTGTATTGCAGCTGCATACCCTTCTGGAAAACGATAATGGAACATCTAGAAAGAACTCAGCAGCTGGTGCCGTAGATCTACCTGAATCAATGCATCTTAACCGGCGATCTTTAGCAGAGTGGCTCGCCAAAGATTTTATGAATGCTTATATCCCAAGTCCCAATTCATCATCATCTCCAGTCTCTCCAAGTCCATCGCCAAGAATGGAAAACTTTCTCTCTTCACTTAGAGCTCTTTCCCCTAAACTCATGGTCATAACTGAACAAGAGTCTGATCTTAATGTATCTCACCTGATGGAAAGAGTCACAGCAGCTTTGCATTACTACAATACACTCTTTGACTGCTTGGAGTCAACGGTCTCAAGAACATCGATTGAAAGGCAGAAGGTTGAGAAAGTAATGTTTGGTGAGGAAATTAAGAACATAATAACATGTGAAGGACTGGATAGAAAGGAAAGGTATGAAAAACTAGAGAAATGGATCTATAGGCTTGAATCAGCTGGCTTCTCCAAGTTCCCCATGAACTACCATGGAATATGCATGCAAGCAAAAAGGCTGTTGGAGAGCTATGGCAATGGATATACCATCAAAGATATGCATGGATGTTCTGTAATCTGCTGGCAAGGTAGACCTCTTTTCTCGGTTTCATCCTGGGGGGCCAGCAATTAA 1290 0.4287 MKSEDRRRCLYNLLSACTSHIVSGCIKDADKDLDCISTLASIDGDSMQRMAAYFNEALGYKVVKHLPGAFSALNSTKVPSVSDELVAKKCFHKLCPFLKLAYEITNRAIIEAMEGEKLVHIIDFNCFEPTQWIDLLRSFSQHPEGAPHIRITGVHQQKVVLDHMSALLTEVAEDLAIPFQFNQVVGTLEDVDTDRLGVRLGEALAVSCVLQLHTLLENDNGTSRKNSAAGAVDLPESMHLNRRSLAEWLAKDFMNAYIPSPNSSSSPVSPSPSPRMENFLSSLRALSPKLMVITEQESDLNVSHLMERVTAALHYYNTLFDCLESTVSRTSIERQKVEKVMFGEEIKNIITCEGLDRKERYEKLEKWIYRLESAGFSKFPMNYHGICMQAKRLLESYGNGYTIKDMHGCSVICWQGRPLFSVSSWGASN* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00956 429 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Pte6g00956 429 ProSiteProfiles GRAS family profile. 1 426 IPR005202 -
Pte6g00956 429 Pfam GRAS domain family 11 425 IPR005202 -
Pte6g00956 429 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 422 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00956 Pte-Chr6 27098257 27100625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00956 1 425 GRAS Transcription Factor Family AT1G50420 50.917 8.57e-146 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte6g00956 GRAS 2.3e-111 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00956 - - qsa:O6P43_001433 511.531