Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00942 ATGGGTCGAGGTAAGATTGAGATTAAGAAGATTGAGAATGCTAATAGCAGGCAAGTCACATTCTCAAAAAGGCGAACTGGGTTGCTGAAAAAGGCTCAAGAGTTGGCTATTCTATGTGACGCTGAGGTTGCAGTCATCATCTTCTCTAATACTGGAAAGCTTTTTGAGTTTTCAAGCTCTGGTATGAAGCAAATTATTTCAAGATACAACAAATTTGTAAATGCTCCAGAGGCTGCTATGGCAGAGCAAAAGGCTCAGGTACTAGCAGCAGAACAAAAGTCCCAGGAAAACCTTTCCCAGAAAAAGGACGAGGCTAAGGAGGTGGAAGTTCTTAAAGAAGAAATTGAAAAGCTAGAAAGAAAACAATTACGCTTGTTGGGTAAGGACTTGAAAGGCATGAGCTTAAAAGAACTACAGCACCTGGAGCAGCAACTAAGTGAAGGTTTATCATGTGTCAAGGAAAGAAGGGAGGAATTGCTGCTGGAGCAAATACAGCTTTCTAGAGTACAGGAACAGCGAGCTTTGCTGGAAAATGAAACTCTGCGCAGACAGGTTGAGGAGCTTCGTTGTCTTTTTCGACCAAATGATCGTGCAGCCACAATTCCGTCTTATATAGAATACTACCCAGTGGGAAGAAAGAACAATGGTCTGAAATATCCAGAGTTTTCCAGTAATTTTTCACTTGAGAAAGAAGATTCAGACACCACTTTGCAATTAGGGTTACCATCAGATGTTCATCACAAGAGGAAAGCAATGGAGAGGGAGACCATTTCTGATGACTCAGATGTTCCAATGGCCCTACATTGA 807 0.4176 MGRGKIEIKKIENANSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKQIISRYNKFVNAPEAAMAEQKAQVLAAEQKSQENLSQKKDEAKEVEVLKEEIEKLERKQLRLLGKDLKGMSLKELQHLEQQLSEGLSCVKERREELLLEQIQLSRVQEQRALLENETLRRQVEELRCLFRPNDRAATIPSYIEYYPVGRKNNGLKYPEFSSNFSLEKEDSDTTLQLGLPSDVHHKRKAMERETISDDSDVPMALH* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00942 268 Pfam K-box region 100 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte6g00942 268 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Pte6g00942 268 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 179 - -
Pte6g00942 268 MobiDBLite consensus disorder prediction 248 268 - -
Pte6g00942 268 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte6g00942 268 Coils Coil 88 128 - -
Pte6g00942 268 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte6g00942 268 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Pte6g00942 268 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte6g00942 268 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte6g00942 268 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte6g00942 268 Coils Coil 159 191 - -
Pte6g00942 268 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte6g00942 268 ProSiteProfiles K-box domain profile. 101 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte6g00942 268 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte6g00942 268 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Pte6g00942 268 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00942 Pte-Chr6 26885182 26888876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00942 1 261 MADS-box Gene Family AT5G13790 53.435 2.07e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte6g00942 K-box 3.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00942 - - cave:132162870 303.523