Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00927 ATGAGTAGTAGTGGTTCAGAGAAGTCCAAACCTGCAGCAATGCCCTCTCCACCTACTTTAGATAGCACTACTAATGCTGAAGGCACAAGTCACAGAAGTGTTAATACAGACAATTCTTTTTCCATTGTACTTGAACATGCATCTAACAATGACATTGAAGCTCTTAAGCAAGTGGTAGATAGGAATCCTGCTGTACTCAATGAGGTTGGCCTATGGTACAGCCTCCAATCTGGGTCAAAAAAGATGGTTCTTCAAAATAGAACTCCATTAATGATTGCTGCTACCTATGGTAGTTTTGATGTTCTGAAGTTTATACTTTCTTATCCTGAGGTTAATGTGAATCTCTCCTGTGGTTCTGATAATACAACTGCCCTCCATTGTGCTGCTTCTAGTGGAACTGTGAATGCAATTGATGTTGTACAGCTACTTTTGTCTTCTGGTGCTGATCCCAATTGCTTGGATGCTAAAGGAAAGCATGCAGTGGATGTTATTGTTGCTACTCCAAAACTTGGCACCGTGAGAGAAACTCTTGAAGAACTCCTTTCTGTGAAAGATTCAAGCTCTAACTCTCCAGTGCACTCTTCCTCACCAGGAACTTTGTTGTCGACATCTCCTTTGGAGAAATTGCCTCCTCCAGACACACTTAAGCTTACTGATGTACTGGTCAATCCTCTTTCAGAGAAGAAAGAATATCCTGTGGATCCATCTCTACCCGACATTAAGAACAGCATTTATGCAACTGATGAGTTCCGCATGTTCTTGTTCAAGGTCAGACCTTGTTCTCGGGCATATTCCCATGATTGGACTGAGTGTCCATTTGTTCATCCAGGCGAAAATGCTCGTAGAAGAGACCCTCGCAAATACCACTACAGCTGTGTTCCTTGTCCTGATTTCAAAAAGGGGTCTTGCCACCGGGGGGATATGTGTGAATATGCACATGGGGTATTTGAGTGCTGGCTGCACCCAGCTCAATATCGGACTCGTCTATGCAAGGACGGCACAAGTTGCAATAGACAGGTGTGCTTTTTTGCACACACTCCTGAAGAGCTCCGCCCACTATATGTCTCCACTGGTTCTGCTGTTGCTTCACCTCGCTCATCTGCTTCTGGCCCCAGTGTCATGGACATGGCTGCTGCAATGAGCCTCATTCCGGGTTCTCCTACTTCTGCAGCATCTCTGTCTCCTTTTGGTCAGCCTATTTCTCCATCTACAAATGGCATTTCACGCTCATCTGGTGCCTGGAGTCAACCAAATGTGCCATCCCTTCATCTCCCAGGAAGCAACCTTCAATCAAGTCGCTTGAGATCTTCTTTAAGTGCACGTGACATTCCACCCGATGCGCTGGAGATGTTAGTCAATTTTGATGGGCAGCAACAGCTTTTGAGTGATGCAAGTTGTTTCTCAAGTCCACGCCCTGGTAGTGTTTCGATGACTCGATCTGGTCGATCAAAGACACTAACTCATTCAAACCTTGAGGAACTATTTTCTGCTGAGATATCTTCACCACGATATTCTGATCTGAATGCAGCTTCAGTCTTCTCCCCTACACATAAATCAGCAGTTCTAAACCAATTCCAGCAGCTGCAGAATGTGTTGTCACCCATCAATACAAATGTACACTCACCTAAGAATCTTGATCACCATCTGTTACAGGCTTCATTTGGGGGTGTCTCTTCTCCTGGAAGGATGTCTCCAAGAAGCATGGAACCAATATCTCCCATGGGCTCACGCCTATCTGCATTGGTCCAGCGGGAGAAATTGCAACAGCATCAACTGAGCCTTTGCTCTAGGGATATGGGGCCAAACACACCTACCTCAGTTGTTGGATCCCCAGTTAGCACATGGTCAAAGTGGGGCTCTCCGAATGGGAAAGTTGATTGGTCAGTTAATGGAGATGAACTTGATCGGATGCGCAAATCATATTCATTTGATCTACGCAACAGTAGTGAAGATCATAACATACCCTGTATGCAATCTCTTGTCAAGGATTCCCCAGCTGAAATGATGAACCAAAAGTTGAACCACAAGTTGTCTGTATCAATACCTGGTGCTACTGCATCGTCTGTGGATCTGAATTCTAATCCTCAAGGTGACCCTGTTGATAGTTCTGTTATAGGAGCTTGGATTGAGCAAATGCAGCTGGATCAGCTTCTTGTCTAG 2160 0.45 MSSSGSEKSKPAAMPSPPTLDSTTNAEGTSHRSVNTDNSFSIVLEHASNNDIEALKQVVDRNPAVLNEVGLWYSLQSGSKKMVLQNRTPLMIAATYGSFDVLKFILSYPEVNVNLSCGSDNTTALHCAASSGTVNAIDVVQLLLSSGADPNCLDAKGKHAVDVIVATPKLGTVRETLEELLSVKDSSSNSPVHSSSPGTLLSTSPLEKLPPPDTLKLTDVLVNPLSEKKEYPVDPSLPDIKNSIYATDEFRMFLFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFKKGSCHRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRQVCFFAHTPEELRPLYVSTGSAVASPRSSASGPSVMDMAAAMSLIPGSPTSAASLSPFGQPISPSTNGISRSSGAWSQPNVPSLHLPGSNLQSSRLRSSLSARDIPPDALEMLVNFDGQQQLLSDASCFSSPRPGSVSMTRSGRSKTLTHSNLEELFSAEISSPRYSDLNAASVFSPTHKSAVLNQFQQLQNVLSPINTNVHSPKNLDHHLLQASFGGVSSPGRMSPRSMEPISPMGSRLSALVQREKLQQHQLSLCSRDMGPNTPTSVVGSPVSTWSKWGSPNGKVDWSVNGDELDRMRKSYSFDLRNSSEDHNIPCMQSLVKDSPAEMMNQKLNHKLSVSIPGATASSVDLNSNPQGDPVDSSVIGAWIEQMQLDQLLV* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00927 719 ProSiteProfiles Zinc finger C3H1-type profile. 294 316 IPR000571 GO:0046872
Pte6g00927 719 MobiDBLite consensus disorder prediction 184 212 - -
Pte6g00927 719 MobiDBLite consensus disorder prediction 1 34 - -
Pte6g00927 719 Pfam Ankyrin repeats (3 copies) 48 152 IPR002110 GO:0005515
Pte6g00927 719 PANTHER UNKEMPT FAMILY MEMBER 45 664 IPR045234 -
Pte6g00927 719 MobiDBLite consensus disorder prediction 595 614 - -
Pte6g00927 719 Gene3D - 41 198 IPR036770 -
Pte6g00927 719 FunFam Zinc finger CCCH domain-containing protein 66 247 315 - -
Pte6g00927 719 PRINTS Ankyrin repeat signature 86 101 IPR002110 GO:0005515
Pte6g00927 719 PRINTS Ankyrin repeat signature 139 153 IPR002110 GO:0005515
Pte6g00927 719 SMART c3hfinal6 324 347 IPR000571 GO:0046872
Pte6g00927 719 SMART c3hfinal6 289 315 IPR000571 GO:0046872
Pte6g00927 719 SMART ANK_2a 120 152 IPR002110 GO:0005515
Pte6g00927 719 SMART ANK_2a 85 115 IPR002110 GO:0005515
Pte6g00927 719 SMART ANK_2a 38 68 IPR002110 GO:0005515
Pte6g00927 719 MobiDBLite consensus disorder prediction 184 203 - -
Pte6g00927 719 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 294 314 IPR000571 GO:0046872
Pte6g00927 719 ProSiteProfiles Ankyrin repeat profile. 120 155 IPR002110 GO:0005515
Pte6g00927 719 ProSiteProfiles Ankyrin repeat region circular profile. 120 154 - -
Pte6g00927 719 MobiDBLite consensus disorder prediction 391 430 - -
Pte6g00927 719 SUPERFAMILY Ankyrin repeat 46 195 IPR036770 -
Pte6g00927 719 Gene3D - 290 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00927 Pte-Chr6 26565729 26569817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00927 19 716 C2H2 Transcription Factor Family AT5G12850 52.329 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte6g00927 Ank_2 5e-12 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00927 - - tcc:18614626 926.391