Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00907 ATGACAGACCCTCAGTCGTCTGGTGTCTATACTGGATGGTTCAACTTCATGCCTCTCCATCCTCATTTCTCTTCTTATAGTACTACTCAGTCCAGCTTATCTTCCACATACCCTATTACTGTCCCAAGCAACAAATTCTCTATGCACTTTCAGACTAATTTAATCAATAGTGCACCAGCTCCTTCCCAGCAACCATCCCTCACAGTCCTTCCTTTGTTAAACAGTTTAAGCCCTACATGCCAGCAGCAAGAGGAAAATGATGAACAGTCAAATAGTGTATGCGTGGAAGAGGAAGAGGACAAGAACGGGAGAAAAGATGGTTGCGATGATGAGGATGACGATGGTGGAACTGTGACTGTAGCCTTATGCATAGGCCTTCCTAGTGTAAATAATACTGAATCAGGTGAAAGGCACCAGATCTCTAAATCTCTAGTAGTGCCGCACGATAAGGAGGAAGCGACTGTGATTCAAGGATATCCAGTAATGGATAAATTAAACAAGGGTCAGTACTGGATTCCAACCCCTTCTCAGATTCTCATTGGTCCCACTCAGTTCTCATGTCCTGTTTGCTGCAAGACTTTCAACAGATACAACAATCTTCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGACCAGATTCTTTAAGAGGAACTCAACCAACGGCAATGCTAAGACTTCCATGTTTTTGCTGTGAGCCAGGGTGCAAGCACAACATAGATCACCCAAGAGCAAAGCCCCTCAAAGACTTCAGAACTCTCCAAACGCACTATAAGAGGAAGCATGGGATCAAACCCTTCATGTGTAGGAAATGTAGCAAGCCATTTGCGGTGAAAGGTGATTGGAGAACACATGAGAAGAACTGTGGGAAAATATGGTACTGCACGTGTGGGTCAGATTTTAAACACAAAAGGTCTTTGAAAGACCACATAAAGGCATTTGGCCTTGGCCATGGAGCTATGAGCATGAATTGCTTCCCCGAAGATGAAGCTACCTCAGAAATTGAACATGGTGACGAGAGTTCAGATTAA 1038 0.4393 MTDPQSSGVYTGWFNFMPLHPHFSSYSTTQSSLSSTYPITVPSNKFSMHFQTNLINSAPAPSQQPSLTVLPLLNSLSPTCQQQEENDEQSNSVCVEEEEDKNGRKDGCDDEDDDGGTVTVALCIGLPSVNNTESGERHQISKSLVVPHDKEEATVIQGYPVMDKLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCEPGCKHNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCSKPFAVKGDWRTHEKNCGKIWYCTCGSDFKHKRSLKDHIKAFGLGHGAMSMNCFPEDEATSEIEHGDESSD* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00907 345 MobiDBLite consensus disorder prediction 95 111 - -
Pte6g00907 345 ProSitePatterns Zinc finger C2H2 type domain signature. 187 207 IPR013087 -
Pte6g00907 345 PANTHER ZINC FINGER PROTEIN WIP2 29 339 IPR043584 GO:0003700|GO:0010468
Pte6g00907 345 FunFam zinc finger protein WIP2-like 184 207 - -
Pte6g00907 345 Gene3D Classic Zinc Finger 184 207 - -
Pte6g00907 345 FunFam Zinc finger protein WIP2 238 320 - -
Pte6g00907 345 Gene3D Classic Zinc Finger 237 327 - -
Pte6g00907 345 MobiDBLite consensus disorder prediction 79 113 - -
Pte6g00907 345 SUPERFAMILY beta-beta-alpha zinc fingers 185 289 IPR036236 -
Pte6g00907 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 185 212 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00907 Pte-Chr6 25567340 25569984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00907 118 341 C2H2 Transcription Factor Family AT3G57670 66.798 4.89e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte6g00907 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00907 - - qsa:O6P43_001350 454.907