Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00891 ATGTCAAGAGAGGTCTTTGGACTGCTGAAGAGGATGCAAAAAATACTGGCTTATGTTTCCAATCACGGTATTGGAAATTGGACACTGGTTTCAAAGAAAGCAGGGCTCAATAGATGTGGCAAGAGCTGCTGGTTAAGATGGACTAACTACCTCGGACCTGATCTCAAGCATGATAGTTTCACTCAACAAGAAGCGCTTATCATAAGCCTTCACAAAGCTATAGGCAGCAGGTGGTCTTTAATTGCAAAGCAACTGCCAGGGAGAACAGACAATGATGTTAACAATTACTGGAATACAAAACTCAAAAAGAAGCTTATCAAGATGGAAATTGATCCAGTCACTCATAAGCCTTTTCCTCAGGTCCTTTCTTATTATGGTCACATCAGTTGCCTCTCTACTAGCAACCATATAGGGCCTGTCAATAAGACCGTAGGAAACAAAGGACAGCAGAAACAACTTCATCTACTGGCCACGCTAGATTTTCAAACGCTAGCATAA 498 0.4177 MSREVFGLLKRMQKILAYVSNHGIGNWTLVSKKAGLNRCGKSCWLRWTNYLGPDLKHDSFTQQEALIISLHKAIGSRWSLIAKQLPGRTDNDVNNYWNTKLKKKLIKMEIDPVTHKPFPQVLSYYGHISCLSTSNHIGPVNKTVGNKGQQKQLHLLATLDFQTLA* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00891 165 CDD SANT 13 51 IPR001005 -
Pte6g00891 165 SUPERFAMILY Homeodomain-like 13 97 IPR009057 -
Pte6g00891 165 CDD SANT 59 101 IPR001005 -
Pte6g00891 165 SMART sant 56 103 IPR001005 -
Pte6g00891 165 SMART sant 10 53 IPR001005 -
Pte6g00891 165 ProSiteProfiles Myb-like domain profile. 62 101 IPR001005 -
Pte6g00891 165 PANTHER F14D16.11-RELATED 13 143 - -
Pte6g00891 165 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 51 IPR017930 -
Pte6g00891 165 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 105 IPR017930 -
Pte6g00891 165 Gene3D - 11 56 - -
Pte6g00891 165 FunFam MYB transcription factor 58 118 - -
Pte6g00891 165 Gene3D - 59 117 - -
Pte6g00891 165 ProSiteProfiles Myb-like domain profile. 13 51 IPR001005 -
Pte6g00891 165 Pfam Myb-like DNA-binding domain 13 51 IPR001005 -
Pte6g00891 165 Pfam Myb-like DNA-binding domain 63 99 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00891 Pte-Chr6 23991587 23992604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00891 14 129 MYB Transcription Factor Family AT3G28470 75.214 2.95e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte6g00891 Myb_DNA-binding 6.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00891 K09422 - qsu:112027568 216.083