Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00884 ATGCACCCCCTGAGGTTTCACGGGATATCATATTCCCCCCTGAAATTTCAGGTGAACTCAGTCGCAGCTCTGGTGAATCTATCATTAGATAAGGTGAACAAGAACAAAATCGTACGGTCAAGAGTGGTTCCTCCATTGATTTATGTGTTGAGAGGTGGATACCCTCAGTCACAGGAACACGCTTGTGGTGCACTTTTCAGCTTAGCCCTTGACGATGACAGCAAGACTGCAATTGGGGTATTGGGAGCTTTGCCGCCGTTGATTCATTTGCTACGATCTGATTGTGAGCGGACTCGGCATGAATCAGCACTCGCCCTATATCATCTTTCCCTAGTTCAAAGCAACCAGACCAAGTTGACCAAACTCGGATCGGTTCCTCTTCTAATGGACATGGTGAAGTCATATCACATGACGAGTCGGATTCTGCTCATTTTGGGCAACTTAGCTGCGGGTGTGGATGGACGTTCCGCATTGTTGGATGCGAGTGCAGTGGAGCACTTGGTCGGGTTATTAGACGAGAAAGAGCCCGTGTCTGGGTCAACCTGTGAGAGCTGTGTTGCAGTGTTGTATGCACTGAGTCGTGGTGGATTGAGATTCAAGGCACTGGCCATGGCGGCCAGAGCGGTGGAGGTGTTGAGGAAGGTTGAGAAAGTAGGAAGTGAAAGAATCATGGTCCCTGAGAATCGTACCCTTTGA 696 0.4928 MHPLRFHGISYSPLKFQVNSVAALVNLSLDKVNKNKIVRSRVVPPLIYVLRGGYPQSQEHACGALFSLALDDDSKTAIGVLGALPPLIHLLRSDCERTRHESALALYHLSLVQSNQTKLTKLGSVPLLMDMVKSYHMTSRILLILGNLAAGVDGRSALLDASAVEHLVGLLDEKEPVSGSTCESCVAVLYALSRGGLRFKALAMAARAVEVLRKVEKVGSERIMVPENRTL* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00884 231 Gene3D - 5 139 IPR011989 -
Pte6g00884 231 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 82 124 IPR000225 GO:0005515
Pte6g00884 231 Pfam Armadillo/beta-catenin-like repeat 72 110 IPR000225 GO:0005515
Pte6g00884 231 Gene3D - 140 224 IPR011989 -
Pte6g00884 231 SUPERFAMILY ARM repeat 15 198 IPR016024 -
Pte6g00884 231 SMART arm_5 112 150 IPR000225 GO:0005515
Pte6g00884 231 SMART arm_5 71 111 IPR000225 GO:0005515
Pte6g00884 231 SMART arm_5 30 70 IPR000225 GO:0005515
Pte6g00884 231 SMART arm_5 151 194 IPR000225 GO:0005515
Pte6g00884 231 PANTHER U BOX DOMAIN-CONTAINING 14 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00884 Pte-Chr6 23652626 23655062 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00884 17 231 U-box Gene Family AT5G40140 60.648 9.35e-74 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00884 - - qsa:O6P43_004571 293.123