Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00872 ATGGAGCTTGATTCAAACCAAGAACCTTTTGATCAAGGGCATACTTCATTGATGAGTTTTGACTTACTATTGAATGAACTTGAATCTACACATGGGCATATAGAGGAACATATCAGGCACCTGGAAGCTGTCTTTAGGGCAAGTCAGCGCCAAAGGTGGAGGAATGGACCAAGTGGATACACTCCGGTTCAAATAACTAATATCACTGCAAGGCTTGAAGCTGCCAATAATCAGGACGATGAAGACAGTTCTGAGCACGTCATTGAAGGAGCAACCGAGTCCGGCGAACCTGTCAAAAGGGGCAATACATTTCTGATGTCTAAAGCAGTGGAGTTAGATGTACATAAGTCTGAAAATGACTCAAGAGGATTTTTCGATTGTAACATTTGCCTTGATATAGCAAAAGATCCGATATTGACCTGTTGCGGTCACTTGTTTTGTTGGGGATGCTTCTATCAATTGTCATATGCTTATTCTAATGCAAAGGAATGTCCAGTTTGTAGAGGAGAGGTCACGGATACCAGTATCATCCCAATTTATGGCAATGGGAGTGTCAATGTCAGTCCTAGTTGCAGACCTACAGAAAAAGCTACAATGATACCTTGTCGGCCTCAGGCACAAAGGATTGAGAGTGTGAGACCGCAGCTTGTAGGACAGCAATCAAACTTTTTACCAATTGAAGAAAGATTTCAGCAATTTAGTGACATAGTTGGAGTGATGAGAGAGCGGCTTCCGTTAGAAAGCCCTCAAAATGATGATCGAAGAAATGGTTCCATGTCAAATTTGCAAAATTCTATCCAGTCCCATACATTGGCGAGTGCCGAGATTGAGAACAATGAGCAGACTCGTCCCTCTTCGATTTCAACATTACTAATTCAACAAGCTGCTGCAGTTTCCTCCTTTTCCTCAGCTTCACATTCTACAGAGAGATTGACCGCTGACCTTGATTCATATATTTACGATCATCATATTGGAGGCAACCATTCATCTCCCGTCTCTGTCAACAGAGAATCTTCAAGCATGGCTAATGTTCAACAATCAGAAACTCCTCCCCCTGATGCTTCTGTTGTAAATGATTTTGAAGACCTGCATTCTCACTCAATCTTCCTTCGGGAGGATATCACTCATGCTGCCAGAGTAAGAGATGATACTTGA 1155 0.4234 MELDSNQEPFDQGHTSLMSFDLLLNELESTHGHIEEHIRHLEAVFRASQRQRWRNGPSGYTPVQITNITARLEAANNQDDEDSSEHVIEGATESGEPVKRGNTFLMSKAVELDVHKSENDSRGFFDCNICLDIAKDPILTCCGHLFCWGCFYQLSYAYSNAKECPVCRGEVTDTSIIPIYGNGSVNVSPSCRPTEKATMIPCRPQAQRIESVRPQLVGQQSNFLPIEERFQQFSDIVGVMRERLPLESPQNDDRRNGSMSNLQNSIQSHTLASAEIENNEQTRPSSISTLLIQQAAAVSSFSSASHSTERLTADLDSYIYDHHIGGNHSSPVSVNRESSSMANVQQSETPPPDASVVNDFEDLHSHSIFLREDITHAARVRDDT* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00872 384 SMART ring_2 127 167 IPR001841 -
Pte6g00872 384 SUPERFAMILY RING/U-box 113 176 - -
Pte6g00872 384 Pfam Zinc finger, C3HC4 type (RING finger) 127 173 - -
Pte6g00872 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 181 IPR013083 -
Pte6g00872 384 MobiDBLite consensus disorder prediction 329 354 - -
Pte6g00872 384 MobiDBLite consensus disorder prediction 75 100 - -
Pte6g00872 384 MobiDBLite consensus disorder prediction 75 93 - -
Pte6g00872 384 ProSiteProfiles Zinc finger RING-type profile. 127 168 IPR001841 -
Pte6g00872 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 88 296 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pte6g00872 384 MobiDBLite consensus disorder prediction 329 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00872 Pte-Chr6 23282469 23284817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00872 87 349 C3H Transcription Factor Family AT3G58030 34.906 8.56e-39 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00872 - - qsa:O6P43_029476 310.842