Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00860 ATGCCAAGCAACGGACAACTTACAGTTCCTCCAGGATTCAGATTCCATCCAACTGATGAAGAGCTTCTCTACTATTACCTAAGGAAGAAAGTGTCTTACGAAGCCATTGATCTTGATGTTATTAGGGAAGTTGATCTCAACAAACTTGAACCTTGGGATCTCAAAGATAGATGCAGAATAGGATCAGGCCCTCAAAATGAGTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACAGGCACTCGCACTAATAGGGCAACCACAGTTGGGTTTTGGAAGGCAACCGGAAGAGACAAGGCTATATATCTCAGTACTTCAAGAAGGATAGGGATGAGGAAGACCCTTGTCTTCTACACAGGTCGTGCTCCTCATGGCCAAAAAACTGAGTGGATTATGCATGAGTACCGCCTTGATGATGATGATGCAGAAGTGCAGGAGGATGGTTGGGTAGTCTGCAGGGTTTTCAAAAAGAAGAACTACAACAGAGGTTTCCAAGCTGATCAGTTTGGTGAGGAGGAAGATCGAAACCAAATGAAATCAAGTGGCCAATCCCAGTTCCTAGAACAAAAACAGCAAATTCATCATCAGCTAAGTTTATATGAGTATAACTTGGATGGCTCCATGCATATGCCACAGCTGTTCAGTCCAGAATCCACTGTTCCAACCACATCATTTGCACCATCATCTAATTTAAACAACATGGATATACTTGAATGTTCTCAAAACTTGTTGAGGCTCACATCAAATAGCAGTATTTGTGGAACTAATCTCATGCAGCAGGAGAGAGTCAATGGCGATTGGTCATTCTTGGACAAGTTGCTAGCATCAAATGGAAACCATGGTGGTCTGGATCTGCATAAATGTAACACTTCCGTGCATGCAGCTACTATGGGTACAACATCTCAGAAGTTCCCATTCATTCCCTATCTTCCATTTGAGAGTGACCTTATGAAGTATCCCAATAAGTAG 972 0.428 MPSNGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDRCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTVGFWKATGRDKAIYLSTSRRIGMRKTLVFYTGRAPHGQKTEWIMHEYRLDDDDAEVQEDGWVVCRVFKKKNYNRGFQADQFGEEEDRNQMKSSGQSQFLEQKQQIHHQLSLYEYNLDGSMHMPQLFSPESTVPTTSFAPSSNLNNMDILECSQNLLRLTSNSSICGTNLMQQERVNGDWSFLDKLLASNGNHGGLDLHKCNTSVHAATMGTTSQKFPFIPYLPFESDLMKYPNK* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00860 323 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Pte6g00860 323 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 224 - -
Pte6g00860 323 Pfam No apical meristem (NAM) protein 10 138 IPR003441 GO:0003677|GO:0006355
Pte6g00860 323 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Pte6g00860 323 FunFam NAC domain-containing protein 18 162 - -
Pte6g00860 323 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00860 Pte-Chr6 22880991 22882602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00860 5 277 NAC Transcription Factor Family AT1G79580 60.984 3.10e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte6g00860 NAM 1.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00860 - - vun:114178728 474.552