Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00855 ATGTCATTCCGTAGTATTGTTCGTGATGTGAGGGATGGACTTGGAAGTTTATCCAGGAGGAGCTTTGAAGTTAGGCTTCCTGGACATCATTGGGGCAAATCACATGGCTCTACCCATGAATTGCTTGATGAGCCTCCAGTGATCCAGACCAGTCGATGGGCTAGCCTCCCTCCTGAGCTTCTGCGAGACGTTATCAAAAGATTGGAAGCTAGTGAAAGTTCATGGCCTGCTCGCAAGCACGTTGTTGCTTGCGCTGCTGTTTGCACTTCGTGGAGGGAAATTTGCAAAGAAATTGTCACAAGCCCTGAATTCTCAGGGAACATTACTTTCCCTATCTCGTTGAAACAGCCTGGGTCTAGAGACGGAACCATCCAGTGCTTCATCAAGAGGGACAAATCTAATATAACATATCACCTTTTTCTTTGTCTTAGTCCTGCTTTGCTTGTTGAAAATGGTAAGTTTCTTCTTTCTGCAAAACGGACCCGAAGAACTACTTGCACAGAGTACGTGATTTCCATGGATGCAGAAAACATATCAAGATCTAGCAGCACTTACATTGGAAAGCTTAGGTCAAATTTTCTTGGAACCAAATTCATAATATACGATACACAGCCTCCTCACAGCAGTACAAAGGCATCACCTCCAGGCCGAAGCCATAGGTTCTACTCAAAAAAAGTTTCTCCAAAAATCCCAACTGTAAGCTACAACATTGCTCAAATCTCCTATGAGCTGAATGTGCTTGGCACAAGGGGACCACGAAAAATGCATTGCTTCATGCACTCAATCCCCATCTCATCCCTTGATCCTGGGGGTAGCGTCCCCAGCCAGCCGGATCTCCTTTCTCGGCCTCTCGATGATTCCTTTCGTAGTATATCCTTCTCGAAATCAGTTGATAGTTCAACGGAGTTTAGCAGTGCTAGATTTTCAGACATCATTCGAGCAAAAAACGACGAAGAGGAAGGAAAAGTAAGACCATTAGTTTTGAAGAACAAGGCACCAAGGTGGCATGAACAGCTGCAGTGTTGGTGCCTTAACTTCCGGGGAAGGGTAACTGTCGCCTCAGTCAAAAATTTTCAATTGATTGCGGCTACACCGCCCCCTACTACTGGTGTGCTGGCACCATCGCAGCAGCCTAGCCAATCAGATCACGACAAGATTATTCTTCAATTTGGCAAGGTGGGCAAAGACATGTTTACTATGGACTATAGATATCCTCTGTCTGCATTTCAGGCATTTGCCATCTGCTTGTCAAGCTTTGATACCAAATTGGCATGTGAATAA 1281 0.4512 MSFRSIVRDVRDGLGSLSRRSFEVRLPGHHWGKSHGSTHELLDEPPVIQTSRWASLPPELLRDVIKRLEASESSWPARKHVVACAAVCTSWREICKEIVTSPEFSGNITFPISLKQPGSRDGTIQCFIKRDKSNITYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDAENISRSSSTYIGKLRSNFLGTKFIIYDTQPPHSSTKASPPGRSHRFYSKKVSPKIPTVSYNIAQISYELNVLGTRGPRKMHCFMHSIPISSLDPGGSVPSQPDLLSRPLDDSFRSISFSKSVDSSTEFSSARFSDIIRAKNDEEEGKVRPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATPPPTTGVLAPSQQPSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00855 426 FunFam Tubby-like F-box protein 48 101 - -
Pte6g00855 426 SUPERFAMILY F-box domain 45 96 IPR036047 GO:0005515
Pte6g00855 426 PANTHER TUBBY-RELATED 48 424 - -
Pte6g00855 426 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Pte6g00855 426 Pfam F-box domain 53 99 IPR001810 GO:0005515
Pte6g00855 426 SUPERFAMILY Tubby C-terminal domain-like 102 426 IPR025659 -
Pte6g00855 426 CDD F-box_AtTLP-like 53 97 - -
Pte6g00855 426 ProSitePatterns Tub family signature 2. 411 426 IPR018066 -
Pte6g00855 426 Gene3D Tubby Protein; Chain A 112 426 IPR025659 -
Pte6g00855 426 FunFam Tubby-like F-box protein 110 426 - -
Pte6g00855 426 Pfam Tub family 114 421 IPR000007 -
Pte6g00855 426 Gene3D - 48 100 - -
Pte6g00855 426 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Pte6g00855 426 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Pte6g00855 426 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Pte6g00855 426 PRINTS Tubby superfamily signature 383 402 IPR000007 -
Pte6g00855 426 PRINTS Tubby superfamily signature 404 426 IPR000007 -
Pte6g00855 426 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Pte6g00855 426 PRINTS Tubby superfamily signature 328 345 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00855 Pte-Chr6 22663983 22668977 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00855 1 427 TUB Transcription Factor Family AT1G76900 68.696 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pte6g00855 Tub 1.8e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00855 K19600 - qsu:111992792 744.191