Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00854 ATGCTTGGGGACTCAACTGTATTAGAGCCAGGCAACTCTGCTCTAGCTGCGGCGGCAGCAGCAACTGGTGGCAGCCATGAAGGTGGTGTTGAGTCTTATTCTGCTGCAGCTGGTGGCCTTGGATCAAATTTAGGTGATGATGAAAGAAGTGGAAGAGGTGAAGAAGTTGGTGATAGAAGCTTTGGTGGGAACCGGTGGCCTCGACAAGAAACTTCAGCACTCCTGAAGATACGGTCTGACATGGATGTGGCTTTCCGTGATGCCAGTGTGAAAGGTCCCTTGTGGGAAGAAGTGTCTAGGAAGCTAGCAAAACTTGGTTACAATCGAAGCGCTAAGAAGTGCAAGGAGAAATTCGAGAACGTCTACAAATATCACAAGAGAACTAAAGAATGCCGGACCGGCAAGACTGACGGCAAGACTTATCGGTTTTTCGATCAATTACAAGCTCTTGAAAGCAACCTATCTATGCATTCAGTCTCACCATCAATACCACAAACTGCTTCAGCAGCCTTGACAGTGGCAATGGGACCGCAGCAGGCTGATACCCAAAGTGTGACTGCTGCTAATGTTGCTCACTATGCTACTGTTCCATCAACCACAGTGACACCAAAACCTATTTCTGTATCCGAAGACATTGACAACCCATCAATAAATCTCACATTCTCTTCACACCCACCAATTCAAGCCAACCCTATGATGAGTCTTCCACCATCGACAGTAAACCCTACCGCACTGCCACCTTCATTGTTCCAAAGCATTGCAACAGATCTTCTCTCTAATTCAACATCTTCTTCTTCTTCAACCTCATCGGATGAGAAGGAGCAAGGACAGCGCAACAAGCGGAAGAGGAAATGGAAGGGCTTCTTTGAGAGGCTAATGAAGGAGGTGATTGATAAGCAAGAGGATATGCAGCAGAGATTCTTGGAAGCCATGGAGAAACGTGAACACAATCGAATGGCGAGAGAAGACGCTTGGAGAGCGCAGGAAATGGAGAGGATCAATAGAGAGAGCGAAAATTTGGCACAAGAGAGGTCATTGGCTGCTGCTAAAGATGCAGCAGTCATGTCATATCTGCAGAAGATAGCTGAACAGCAGGCATTCAGTAACACCAATTTCCCCGCTGCTCAACCGCAGCAACCAACAATACCGTCTCTGACACCGGTGCACCCACCAGCCGCTCCGGTTCCTCCACGGCCACAGTCGCACCTTCAACAGCAAGCCCTACCACTCAAGCTGCCATCTTCAGTTCCACAGCATCATCAGGTGACACCGAATATACATAGACATATAGAATTCCCAAATAAGGAAGATAATTTGGAGCAGTATTTCTTGCCAGCAAGCTCTTCAAGATGGCCGAAGGTTGAGGTTCAAGCGTTGATTCAGTTACGCACCAGTTTGGATACCAAGTACCAAGATAGTGGGCCCAAAGGACCGCTGTGGGAGGAAATCTCGGCAGCCATGAGAAAACTTGGTTACAATAGGAATGCTAAGAGGTGCAAAGAGAAATGGGAGAACATCAACAAATACTTCAAGAAAGTGAAGGAGAGCAACAAGAGAAGACCCGAAGATTCTAAGACCTGCCCTTATTTCCATCTCCTAGATGCCATATATAAAGAGAAGAACAAGTTTGATAACTCATCATCAGCTGGGAAACCAGAGATCTTGACCGTTGGGGGTGCTCCATTGATGGTAAGACCTGAGCAGCAGTGGCCACCAAAGCAAGAAAGACGGCCTGGAACTGGACCAGCATCCCCAGGACCAGATATGACTATGGAAGATTTGGAAAGTGAGCCACTGGAGGAACATCACGAGGATGATGTAGAAGATGAAGGAGGCAGCAACTTCGAAATAGTAACAAGTAAATCATCTTCAGAGAGGGACACGTGA 1887 0.4727 MLGDSTVLEPGNSALAAAAAATGGSHEGGVESYSAAAGGLGSNLGDDERSGRGEEVGDRSFGGNRWPRQETSALLKIRSDMDVAFRDASVKGPLWEEVSRKLAKLGYNRSAKKCKEKFENVYKYHKRTKECRTGKTDGKTYRFFDQLQALESNLSMHSVSPSIPQTASAALTVAMGPQQADTQSVTAANVAHYATVPSTTVTPKPISVSEDIDNPSINLTFSSHPPIQANPMMSLPPSTVNPTALPPSLFQSIATDLLSNSTSSSSSTSSDEKEQGQRNKRKRKWKGFFERLMKEVIDKQEDMQQRFLEAMEKREHNRMAREDAWRAQEMERINRESENLAQERSLAAAKDAAVMSYLQKIAEQQAFSNTNFPAAQPQQPTIPSLTPVHPPAAPVPPRPQSHLQQQALPLKLPSSVPQHHQVTPNIHRHIEFPNKEDNLEQYFLPASSSRWPKVEVQALIQLRTSLDTKYQDSGPKGPLWEEISAAMRKLGYNRNAKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHLLDAIYKEKNKFDNSSSAGKPEILTVGGAPLMVRPEQQWPPKQERRPGTGPASPGPDMTMEDLESEPLEEHHEDDVEDEGGSNFEIVTSKSSSERDT* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00854 628 MobiDBLite consensus disorder prediction 563 628 - -
Pte6g00854 628 MobiDBLite consensus disorder prediction 18 67 - -
Pte6g00854 628 Coils Coil 330 350 - -
Pte6g00854 628 FunFam Trihelix transcription factor GT-2 66 127 - -
Pte6g00854 628 CDD GT1 64 129 - -
Pte6g00854 628 ProSiteProfiles Myb-like domain profile. 449 507 IPR001005 -
Pte6g00854 628 PANTHER FI21293P1 45 578 - -
Pte6g00854 628 MobiDBLite consensus disorder prediction 373 400 - -
Pte6g00854 628 Pfam Myb/SANT-like DNA-binding domain 449 536 IPR044822 -
Pte6g00854 628 Pfam Myb/SANT-like DNA-binding domain 64 150 IPR044822 -
Pte6g00854 628 MobiDBLite consensus disorder prediction 259 282 - -
Pte6g00854 628 MobiDBLite consensus disorder prediction 47 61 - -
Pte6g00854 628 MobiDBLite consensus disorder prediction 383 398 - -
Pte6g00854 628 Gene3D - 66 127 - -
Pte6g00854 628 Gene3D - 451 512 - -
Pte6g00854 628 SMART sant 62 124 IPR001005 -
Pte6g00854 628 SMART sant 447 509 IPR001005 -
Pte6g00854 628 MobiDBLite consensus disorder prediction 593 612 - -
Pte6g00854 628 CDD GT1 449 514 - -
Pte6g00854 628 FunFam Trihelix transcription factor GT-2 451 512 - -
Pte6g00854 628 ProSiteProfiles Myb-like domain profile. 64 122 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00854 Pte-Chr6 22631460 22634585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00854 54 570 Trihelix Transcription Factor Family AT1G76880 51.750 4.95e-152 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pte6g00854 Myb_DNA-bind_4 1.2e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00854 - - qsa:O6P43_004191 636.721