Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00838 ATGCCTCCACGAACAGTAAAAAGAGGAGGGGCAGCCGCTGCAGCGAAGCGGAAAGCGAAAGCCCAGAACACCCAGCAACAGCAGCAACTTGTACAGGAAAGTGAACCCGTCGTTGAAGAAGCTGTGAAGGTCGACGACAAGATTGTAGTTGTTGAAGACGATGAGGATGAGGTTAAGTTAGATGAATATTCTGTTGATGAAGATAAATCTGTCATCGAAGAGAAACCAATTCTGGAGGAAAAACCTATTTTGGGTGGCCATCTGGCAATGGAGAGTGAGGTGGACAGAAAATCTAATGTCAATGGATCGGTTCAGATCAAAAAGGAAGACGAAGTTAAAGATTCAGTAGATGAATATGAGAGAGATGAACGCTTAGACCTGGAGGATAATGATCATGAGTATGAACATGAGGAGTTCGGAGGGGTTGATTATGATGACAAGGAAATTGGACAAGAAGATGTGCCAGAAGTTGAAGAGTTAGAGGGAGAACCTGATGATATTGTGGGTGAAGATGGTGATATGGTTGAGGAGGAAGTTGAGGAGATCAATGAAGAGCTTGAAGTTGGAGAGGATGATGAGCATACTGGCATGGAGCATGAACATGAGGCTGATAATGAGCATGATCATGATAATGGCCATCTCGAGCATACTGGAATTGTTGATGCAGAGGAAGAGGAGCACCATGATGTTGTGAAGGAGAGGCGGAAGAGAAAGGAATTCGAGGTATTTGTCGGTGGCTTAGACAAGGATGTTACTGAAGATGATCTTCGAAAGGTTTTTAGTGGTGTTGGTGAGGTTACTGAAATCAGGTTGATGATGAACCCTCAAACTAAGAAGAACAAGGGTTTTGCATTCTTGCGTTTTGCAACTGTGGAACAAGCGAAGCGAGCTGTAACAGAGCTCAGAAACCCCATGATTAATGGGAAACGATGTGGTGTTAGTCCAAGTCAGGATAGTGATACACTCTTTTTGGGTAATGTATGCAAGACATGGACAAAAGAATATTTAAAGGAGAAGTTAAAACATTATGGAGTCCACAATGTTGAGGATATAATACTGGTAGAAGATGGTAACAATGAGGGCATGAACCGTGGGTTTGCTTTTCTGGAGTTTTCATCTCGGTCAGATGCTATGGATGCCTTTAAGCTTCTTCAGAAGCGAGATGTGGTTTTTGGAGTGGATAGGCCCGCAAAGGTTTCTTTTGCAGATTCTTTTATTGACCCGGGTGATGAAATTATGTCGCAGGTTAAGACTGTCTTCATCGATGGTCTGTCTGTTTCTTGGGATGAGGATCATGTCAAGGGATTTCTCAAAAAATATGGAGAAATTGAGAAGATTGAGCTTGCAAGGAATATGCCATCTGCCAAGAGGAGGGATTTTGGATTTGTCACATTTGATTCGCATGATGCTGCTGTGACATGTGCTAAAAGCATTAACAATGCAGAGTTGGGTGAAGGAGATAACAAGGCTAAAGTTAGGGCCAGATTATCAAGACCCCTTCAGAGAGGGCGTGGTGGAAAACATGTTGGCCGTGCGGACTACCATTTGACCCGTGCAATAGGAAGGTCTGTTAGTCGTTCTTGGACTCGTCCTAGCTCCTATAGTCTTCCATCACATCATGTTAGGAGTTTTCCCGCCCGTGTTCCTGCTGCTAGCTTGAAGAGAACTGTTGGGGTTAGAGATAGACGGCCTTTGATGTCCTTGTCCGTAAGGTCAAGACCACTGCCTCCTCCTCCTAGAGCATATGATAGGAGACCCACTGCTCCATCATATCCAAAGAGCAGCATGAAGAGAGATTATGTTCGGCATGATGAACTCCCTCCTCCAAGGAGCAGAACAGCTGCTGATTATGGCTATAGGGTGGCTCCAGAGAGACGCCCTTCGTATAGAGAAAGTTATTCAGATCGGGGTCCTGTTTATTCTGATCTGCCCAGGAGCACATCTCGCACTGGACCTAGGAGGGGTTATGTGGACGACGATGATGGGCAGAGGTTTCAGAGACAACCTCTTCCTCCTCCTCCAGCAGCACCATATCGGGAACGTGGACGGGACTATGATACTATGTCTGGCTCTAAACGTCCATACAGTGCCATTGATGATGTTCCTCCACGATATGCTGATCCTAATGTCCGCCAATCTAGAGCACGATTGGACTATGATTACAGTGGTAGCAGTTCTCAGTTTTCAGATGCATATGGTGACAGGTTCAGTAGATCCAATTTGGGATACAGTGCCAGCAGGAGTTCTATCTCAGGTCAAGATTCACATGAAATGTACGGCAGTCGCCAAGGAATGGGTTATGGAGGTTCTTATGGTGGCAGTAATGTTGGTATGTACTCATCAAGCTATGGCAGTGATTACATACCCCGTGGGAGTGATGTTGGTGGTGGCTCATATTCATCAATGTACCCTGGTCGCAGCATGAACGGTAGTAGTTACATGGGCAGTGGTTCTGGATCCTACTATTGA 2469 0.4532 MPPRTVKRGGAAAAAKRKAKAQNTQQQQQLVQESEPVVEEAVKVDDKIVVVEDDEDEVKLDEYSVDEDKSVIEEKPILEEKPILGGHLAMESEVDRKSNVNGSVQIKKEDEVKDSVDEYERDERLDLEDNDHEYEHEEFGGVDYDDKEIGQEDVPEVEELEGEPDDIVGEDGDMVEEEVEEINEELEVGEDDEHTGMEHEHEADNEHDHDNGHLEHTGIVDAEEEEHHDVVKERRKRKEFEVFVGGLDKDVTEDDLRKVFSGVGEVTEIRLMMNPQTKKNKGFAFLRFATVEQAKRAVTELRNPMINGKRCGVSPSQDSDTLFLGNVCKTWTKEYLKEKLKHYGVHNVEDIILVEDGNNEGMNRGFAFLEFSSRSDAMDAFKLLQKRDVVFGVDRPAKVSFADSFIDPGDEIMSQVKTVFIDGLSVSWDEDHVKGFLKKYGEIEKIELARNMPSAKRRDFGFVTFDSHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGRGGKHVGRADYHLTRAIGRSVSRSWTRPSSYSLPSHHVRSFPARVPAASLKRTVGVRDRRPLMSLSVRSRPLPPPPRAYDRRPTAPSYPKSSMKRDYVRHDELPPPRSRTAADYGYRVAPERRPSYRESYSDRGPVYSDLPRSTSRTGPRRGYVDDDDGQRFQRQPLPPPPAAPYRERGRDYDTMSGSKRPYSAIDDVPPRYADPNVRQSRARLDYDYSGSSSQFSDAYGDRFSRSNLGYSASRSSISGQDSHEMYGSRQGMGYGGSYGGSNVGMYSSSYGSDYIPRGSDVGGGSYSSMYPGRSMNGSSYMGSGSGSYY* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00838 822 CDD RRM_SF 322 400 - -
Pte6g00838 822 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 417 499 IPR000504 GO:0003723
Pte6g00838 822 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 16 806 - -
Pte6g00838 822 SUPERFAMILY RNA-binding domain, RBD 319 484 IPR035979 GO:0003676
Pte6g00838 822 MobiDBLite consensus disorder prediction 19 34 - -
Pte6g00838 822 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 419 484 IPR000504 GO:0003723
Pte6g00838 822 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 242 310 IPR000504 GO:0003723
Pte6g00838 822 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 322 387 IPR000504 GO:0003723
Pte6g00838 822 MobiDBLite consensus disorder prediction 571 585 - -
Pte6g00838 822 MobiDBLite consensus disorder prediction 192 232 - -
Pte6g00838 822 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 320 404 IPR000504 GO:0003723
Pte6g00838 822 Gene3D - 321 403 IPR012677 -
Pte6g00838 822 SUPERFAMILY RNA-binding domain, RBD 241 344 IPR035979 GO:0003676
Pte6g00838 822 Gene3D - 407 524 IPR012677 -
Pte6g00838 822 MobiDBLite consensus disorder prediction 1 37 - -
Pte6g00838 822 MobiDBLite consensus disorder prediction 596 610 - -
Pte6g00838 822 FunFam Heterogeneous nuclear ribonucleoprotein Q 321 403 - -
Pte6g00838 822 MobiDBLite consensus disorder prediction 564 712 - -
Pte6g00838 822 Gene3D - 165 320 IPR012677 -
Pte6g00838 822 CDD RRM_SF 242 314 - -
Pte6g00838 822 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 199 320 - -
Pte6g00838 822 SMART rrm1_1 418 493 IPR000504 GO:0003723
Pte6g00838 822 SMART rrm1_1 241 314 IPR000504 GO:0003723
Pte6g00838 822 SMART rrm1_1 321 400 IPR000504 GO:0003723
Pte6g00838 822 Coils Coil 172 192 - -
Pte6g00838 822 MobiDBLite consensus disorder prediction 187 232 - -
Pte6g00838 822 CDD RRM_SF 419 484 - -
Pte6g00838 822 MobiDBLite consensus disorder prediction 112 148 - -
Pte6g00838 822 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 240 318 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00838 Pte-Chr6 20978304 20982277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00838 235 479 Eukaryotic Initiation Factors Gene Family AT1G49760 23.792 2.87e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00838 - - cave:132189564 924.85