Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00819 ATGGAATCAGATCTTGGTAAACTCTTCATTGGTGGGATTTCATGGGACACAGATGAGGAACGGCTTAAAGAGTATTTTCGGAAATACGGGGAGGTGATAGAAGCTGTGATTATGAGAGATCGGACAACTGGTCGTGCTCGTGGCTTTGGTTTTGTTGTCTTTGCTGATCCTGGTGTTGCAGAAAGAGTCATCATGGACAAGCACATGATTGATGGCCGTACTGTGGAAGCAAAGAAAGCTGTTCCCAGAGATGATCAACACTCTTTAAATAGAAACACTTCTAGTGTTCATGGTTCTCCTGGTCCTGGACGAACAAAAAAGATTTTTGTTGGAGGTTTACCATCAACTATAACAGAGAGTGACTTCAAGAAGTACTTTGATCAATTTGGTACAATTAATGATGTTGTGGTAATGTATGATCACAATACCCAGAGGCCAAGAGGATTTGGCTTCATTACATATGATTGTGAGGAAGCTGTGGACAGAGTTCTGTACAAAACGTTTCATGAACTTAATGGTAAAATGGTTGAGGTCAAGAGGGCAGTTCCCAAAGAGCTTTCGCCAGGGCCCAGCCGGAGCCCTTTGCTAGGATATAACTATGGTTTGAATAGGACAAGTAACTACTTAAACAGTTATGGTCAAGATTATAATACGAGTCCAGTTGGAGGTTACGGGGTGAGGATGGATGGCAGGCTTAATTCCCTTGCCAATGGGCGAAGTGCCTTTTCCCCATTTGGAACAACAGGTTATGGAGTGGGTGTTAATTTGGAGACCGGATTGAGTCCAAGTTATGGTGGGACTTCCAATTTTGGGGGTAATCTAGGATATGGTCGGATGTTCAATCCTTTCTACAATGGCAATTCAGGAAGGTACACAACTCCAATTGGTTATAATGGCAGAAGTGATTCTCTTTTGAACTCAAGTTCCAGAACTGTCTGGGGAAATGCTGGCCTAACCAATGCCAATAGTCCAGCCAGCCCTGGGCCTTACTTGGGATCAGGGAGCGGAGGCTTTGGATTTTCAATTGGCAATACTGGAGCAAATTGGGGACCTGCTATTCCAACACAGGGTGGAGGCAGTGCCTCCGGTTATGGAGTTGGGAATTCTATTTATGGCAGAAGAGATGGTAACTTTAGCTTAGGAGGGGGTGGGTTTGTTAGAAGTAATGGCACAGGTGGGAACCCAACCTCTTCATTTGCTCCAACAACAGGTGGCTATGAAGTATCCTACGAAGATATATACCACAGTAATTCAGTTTATAATAACTCAACCTGGCGATCCACTACTCCTGAGCTTGATGGTTCTGATTCATTTGGTTATGGACTTGGTGGTATAGCCTCGGATGCCCCTGCCAAAAGTTCCGAGGGTTATGTTGGAAGTTACAATGTTACAAGTAGACAACCTAATAGAGGAATTGCTGCCTAG 1425 0.4414 MESDLGKLFIGGISWDTDEERLKEYFRKYGEVIEAVIMRDRTTGRARGFGFVVFADPGVAERVIMDKHMIDGRTVEAKKAVPRDDQHSLNRNTSSVHGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDCEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLLGYNYGLNRTSNYLNSYGQDYNTSPVGGYGVRMDGRLNSLANGRSAFSPFGTTGYGVGVNLETGLSPSYGGTSNFGGNLGYGRMFNPFYNGNSGRYTTPIGYNGRSDSLLNSSSRTVWGNAGLTNANSPASPGPYLGSGSGGFGFSIGNTGANWGPAIPTQGGGSASGYGVGNSIYGRRDGNFSLGGGGFVRSNGTGGNPTSSFAPTTGGYEVSYEDIYHSNSVYNNSTWRSTTPELDGSDSFGYGLGGIASDAPAKSSEGYVGSYNVTSRQPNRGIAA* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00819 474 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Pte6g00819 474 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Pte6g00819 474 SMART rrm1_1 107 179 IPR000504 GO:0003723
Pte6g00819 474 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pte6g00819 474 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Pte6g00819 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pte6g00819 474 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 470 - -
Pte6g00819 474 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pte6g00819 474 MobiDBLite consensus disorder prediction 80 105 - -
Pte6g00819 474 MobiDBLite consensus disorder prediction 457 474 - -
Pte6g00819 474 CDD RRM2_Hrp1p 107 184 - -
Pte6g00819 474 MobiDBLite consensus disorder prediction 450 474 - -
Pte6g00819 474 Gene3D - 6 88 IPR012677 -
Pte6g00819 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Pte6g00819 474 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Pte6g00819 474 Gene3D - 103 189 IPR012677 -
Pte6g00819 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Pte6g00819 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00819 Pte-Chr6 20207907 20210622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00819 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 23.596 1.54e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00819 K14411 - gmx:100794390 754.977