LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte6g00815	ATGGAGAGGTTCAAACAGCTCCAACAAGCGCAGGAAAGGGATAAAGAGAAGACCACCAAATCAGGGGATATTAAAACAAGTAAAATTGTTCCTGGCAGTTTGACTCCAAATCCCTCCTTGAGTAAGACAAATAATATGCAGAAAACACCCCAGATTGCTTCAGGTGGTAAACTTGCTTTCAGCTTGAAACAGAAGTCGAAACTAGTGCCACCCCCTGTGAAACTTGCAAGTGATGAGGATGAAGAAGAAGCTGCCAGTGTTGCGAATGACACAAGGGGTGCACCATCTAAAAGGCAGAAGATGGGCCAAGCTGAAGGCTCCGAGCAATTATCAGGAGCAGTTGATGTTGCACCACCTTCCCCAAGTGATCCTACAATAAAGAAAGTTGCTGACAAACTTGCAAGTTTTGTGGCTAAAAATGGAAGACAATTTGAGGATGTTACTCGACAAAAAAATCCAGGGGATACTCCTTTTAAATTTTTATTTGATCAAAACTGTGCTGAATACAATTATTATGAATATCGGTCCCAAACATCTCGTAACGATTCTGGCACCCAATCAAGCAATGATTCCTTGGCTATGATGGAGTTCTTCATGAAGAAGGCTGCACAGGAAGAGAGACGGAGACAGCCTAAGCAGTCAAAAGACGAGATTCCACCACCTCCTTCTCTTCAAGGTAAAAAGGGGCATCATATGGGTGATTATATTCCCCCAGAAGAGCTTGACAAGTTCTTGTCTACCTGCAATGATGTGGCTGCACAGAAGGCTGCTAAGGAGGCTGCAGAGAGGGCAAGAATTCAGGCTGATAATGTAGGGCACAGACTCTTGTCTAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGTAGCTCCAACAAGGGTATTTCAGATCCAATCATGGCAGGTGGTGTTAAAGCCAACAATTTGGGTGTTGGTGCTCACAATCCTGGGGAGGTAACTCCTGATGACGACATATATGAGCAATACAAAAAACGTATGATGCTTGGTTATCGGTACAGACCGAACCCCTTGGTAAGATTGCCGGATGCTCCCTTTCTGTTTATTTTGTTGGCCAAAACATTTGTGCTTAATCTGGTTCTTACTTCTTACTTATTCATGTTTATGTTGGGACAACAATCCGCGTAA	1143	0.4366	MERFKQLQQAQERDKEKTTKSGDIKTSKIVPGSLTPNPSLSKTNNMQKTPQIASGGKLAFSLKQKSKLVPPPVKLASDEDEEEAASVANDTRGAPSKRQKMGQAEGSEQLSGAVDVAPPSPSDPTIKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDQNCAEYNYYEYRSQTSRNDSGTQSSNDSLAMMEFFMKKAAQEERRRQPKQSKDEIPPPPSLQGKKGHHMGDYIPPEELDKFLSTCNDVAAQKAAKEAAERARIQADNVGHRLLSKMGWKEGEGLGSSNKGISDPIMAGGVKANNLGVGAHNPGEVTPDDDIYEQYKKRMMLGYRYRPNPLVRLPDAPFLFILLAKTFVLNLVLTSYLFMFMLGQQSA*	381

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte6g00815	380	PANTHER	ARGININE/SERINE RICH SPLICING FACTOR SF4/14	182	343	IPR040169	-
	Pte6g00815	380	MobiDBLite	consensus disorder prediction	70	126	-	-
	Pte6g00815	380	SMART	surpneu2	127	181	IPR000061	GO:0003723\|GO:0006396
	Pte6g00815	380	Pfam	G-patch domain	269	312	IPR000467	GO:0003676
	Pte6g00815	380	ProSiteProfiles	SURP motif repeat profile.	129	172	IPR000061	GO:0003723\|GO:0006396
	Pte6g00815	380	SMART	G-patch_5	266	313	IPR000467	GO:0003676
	Pte6g00815	380	MobiDBLite	consensus disorder prediction	24	54	-	-
	Pte6g00815	380	SUPERFAMILY	Surp module (SWAP domain)	111	176	IPR035967	GO:0003723\|GO:0006396
	Pte6g00815	380	MobiDBLite	consensus disorder prediction	1	58	-	-
	Pte6g00815	380	MobiDBLite	consensus disorder prediction	202	234	-	-
	Pte6g00815	380	Gene3D	Surp module	76	184	IPR035967	GO:0003723\|GO:0006396
	Pte6g00815	380	MobiDBLite	consensus disorder prediction	1	23	-	-
	Pte6g00815	380	ProSiteProfiles	G-patch domain profile.	268	315	IPR000467	GO:0003676
	Pte6g00815	380	Pfam	Surp module	128	175	IPR000061	GO:0003723\|GO:0006396

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte6g00815	Pte-Chr6	20051436	20056471	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte6g00815	264	311	C2H2 Transcription Factor Family	AT5G26610	50.000	2.28e-08	53.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte6g00815	K13096		-	qsa:O6P43_001332	475.707