Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00806 ATGGATCAATCAGAACAGTCACAACAACATCATCATGTGGTCGGAGTTGAACCAAGCACTGGCCAGATGGCATATCCAACTCCCTACCAACCCACTTCCATGGGGGCGTCTGGTGTTGTCCCTTCTTCAACCCAGCCACCAGGATCATTTCCCAATGTACAGCACCAAATTGCTTATCAGCAAGCTCAGCATTTTCACCATCAACAGCAGCAGCAGCAGCTCCAGATGTTTTGGGCAAACCAGATGCAAGAAATTGAGCAAACAAATGACTTCAAGAACCATAGTCTTCCCCTTGCTCGGATTAAGAAAATAATGAAAGCTGATGAAGACGTCAGGATGATTTCTGCGGAGGCACCAGTTATATTTGCAAAAGCTTGTGAAATGTTCATCTTGGAGCTGACTTTACGTTCTTGGATCCACACAGAAGAAAACAAGAGGAGAACACTGCAAAAGAATGATATTGCAGCTGCTATTTCTAGAACAGATGTCTTTGATTTCTTGGTTGATATTATTCCAAGAGATGAACTAAAAGAAGAGGGGCTGGGTGTACCCAAGGCCACTATTGTTGCTTCTCCACCTGATATTCCATATTACTATGTTCCACAGCAGCCTCCCCCAGGAGTGATCATGGGGAAGCCAATTGGCCAAGCTGCAGCACAATATGGTACCCAGCAACCTCCTCCACCCATGGCATTTATGCCATGGTCACAGACACAATCTCTGCAGCAGCAGCAACAAAAGGATAGGAATACTGCATAA 759 0.4532 MDQSEQSQQHHHVVGVEPSTGQMAYPTPYQPTSMGASGVVPSSTQPPGSFPNVQHQIAYQQAQHFHHQQQQQQLQMFWANQMQEIEQTNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVPKATIVASPPDIPYYYVPQQPPPGVIMGKPIGQAAAQYGTQQPPPPMAFMPWSQTQSLQQQQQKDRNTA* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00806 252 Gene3D Histone, subunit A 56 173 IPR009072 GO:0046982
Pte6g00806 252 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 58 236 - -
Pte6g00806 252 MobiDBLite consensus disorder prediction 219 252 - -
Pte6g00806 252 Pfam Core histone H2A/H2B/H3/H4 67 158 IPR007125 GO:0003677
Pte6g00806 252 MobiDBLite consensus disorder prediction 234 252 - -
Pte6g00806 252 SUPERFAMILY Histone-fold 35 167 IPR009072 GO:0046982
Pte6g00806 252 MobiDBLite consensus disorder prediction 1 50 - -
Pte6g00806 252 MobiDBLite consensus disorder prediction 23 50 - -
Pte6g00806 252 FunFam Nuclear transcription factor Y subunit gamma 61 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00806 Pte-Chr6 19720474 19723696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00806 74 203 CCAAT-HAP5 Transcription Factor Family AT1G56170 88.722 9.78e-81 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pte6g00806 CBFD_NFYB_HMF 2e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00806 K08066 - rcu:8260315 311.997