Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00790 ATGGCGAAAAAGGCCAAGAAGTCTCTCTCTTTCTCTGCTTCTGCTTCTGAAGCTTCTGACGAAAAAATGGTCTTCATAAAATCGACAAATGAATCGGAAAGGATGGGGCAGAGGACAAGACTGAGTGGCGTTGTAAAGAGGAGAAATTCAGGCGGAAAACCTGTTAAGCCAAAGAAGAAAAAAGAAAAGATCGACGCCAAGAAGCCGAAGAAGCCTCCAACTGCTTTTTTCTACTTCTTGGAGGATTTTCGTAAGGAATTTCAGGAGATGAACCCAGACATCAAATCAATGCGTGACATTGGCAAGGCATGTGGAGAAAAATGGAAAACAATGACCTATGAGGAAAAGGTTCAATATTATGACATAGCCATGGAGAAGCGAGCAGAGTTTGACAGAGCAATGGCAGGATATAACAAGAGAAAGGACAATGGCGAGGATGAAGAAACTGATGAGGATACAGAGTATGATGAATAG 474 0.4219 MAKKAKKSLSFSASASEASDEKMVFIKSTNESERMGQRTRLSGVVKRRNSGGKPVKPKKKKEKIDAKKPKKPPTAFFYFLEDFRKEFQEMNPDIKSMRDIGKACGEKWKTMTYEEKVQYYDIAMEKRAEFDRAMAGYNKRKDNGEDEETDEDTEYDE* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00790 157 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 39 154 IPR031061 -
Pte6g00790 157 MobiDBLite consensus disorder prediction 51 66 - -
Pte6g00790 157 MobiDBLite consensus disorder prediction 135 157 - -
Pte6g00790 157 SUPERFAMILY HMG-box 54 139 IPR036910 -
Pte6g00790 157 MobiDBLite consensus disorder prediction 1 70 - -
Pte6g00790 157 CDD HMG-box_AtHMGB1-like 70 130 - -
Pte6g00790 157 SMART hmgende2 68 139 IPR009071 -
Pte6g00790 157 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 69 138 IPR009071 -
Pte6g00790 157 Pfam HMG (high mobility group) box 69 138 IPR009071 -
Pte6g00790 157 Gene3D High mobility group box domain 53 153 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00790 Pte-Chr6 17973020 17978375 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pte6g00790 HMG_box 4.8e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00790 - - tcc:18596526 158.303