Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00711 ATGGTTTCCCCAGAAAATACCAATTGGTATTTTGACTATGCCTTCGTAGATGACCTACCCGTCACGGATGGGATCCCAAGTTCTGGCTTTAACTGGTCGGCGCAGCCTTTGGCTGGTTCTTCTACTTTCAGCCTTGAAAAGGATGGTTCTATAGGAGATTGTGATGCCCAGAAGGAGTCTGGATCAAAGAAGAGGGGTAGATCTGATTCATGTGCTGCAACAAGCTCCAAGGCAAGTCGTGAGAAACTGCGGAGGGATAGGCTCAATGACAAGTTTCTTGAATTGAGCTCCATTTTGGAGCCGGGAAGGTCTCCAAAGACAGATAAATCTGCCATTTTGGTTGAAGCTGCCCGGATGGTGACTCAGCTGCGTGGTGAAGCTCAGAAGTTGAAGGATACTAATAAAAATCTCCAAGATAAGATTAAAGAGCTAAAGGTTGAAAAGAATGAACTTCGCGACGAGAAACAGAGGCTTAAGGCTGAGAAAGACAAGTTAGAGCAACAGCTCAACACCGTGAACGCACAACCTGGTTTTATGCATCCCCCACCTGCAGTACCAACTGCATTTGCTCCTCAAGGCCACGCCCCTGGGCACAAGTTGGTGCCTTTCATTGGTTACCCTGGAGTTGCAATGTGGCAATTTATGCCTCCGGCTTCAGTGGATACTTCACAGGATCATGTACTCCGTCCACCAGTTGCCTAA 702 0.4758 MVSPENTNWYFDYAFVDDLPVTDGIPSSGFNWSAQPLAGSSTFSLEKDGSIGDCDAQKESGSKKRGRSDSCAATSSKASREKLRRDRLNDKFLELSSILEPGRSPKTDKSAILVEAARMVTQLRGEAQKLKDTNKNLQDKIKELKVEKNELRDEKQRLKAEKDKLEQQLNTVNAQPGFMHPPPAVPTAFAPQGHAPGHKLVPFIGYPGVAMWQFMPPASVDTSQDHVLRPPVA* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00711 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 123 IPR011598 GO:0046983
Pte6g00711 233 PANTHER BHLH TRANSCRIPTION FACTOR 4 233 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Pte6g00711 233 MobiDBLite consensus disorder prediction 44 83 - -
Pte6g00711 233 MobiDBLite consensus disorder prediction 51 66 - -
Pte6g00711 233 CDD bHLH_AtILR3_like 77 152 - -
Pte6g00711 233 SMART finulus 78 129 IPR011598 GO:0046983
Pte6g00711 233 Pfam Helix-loop-helix DNA-binding domain 76 123 IPR011598 GO:0046983
Pte6g00711 233 Coils Coil 113 175 - -
Pte6g00711 233 FunFam Transcription factor bHLH34 63 121 - -
Pte6g00711 233 CDD bZIP 138 169 - -
Pte6g00711 233 Gene3D - 72 149 IPR036638 GO:0046983
Pte6g00711 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 137 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00711 Pte-Chr6 11948238 11950565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00711 1 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 70.042 1.31e-109 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte6g00711 HLH 5.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00711 - - qsa:O6P43_000861 372.474