Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00690 ATGGTGGAGCCTATAGAGCTACTCCGATCCAATCTCTCTCGGGTTAGGATTCCGGAGCCTACCAATCGTATCTTCAAGGAAGAATGCTGCTTAACCTTTGATACTCCTAGATCAGAAGGGGGATTGTTCATCGACATGTACACTTTTCTTGCTTTTGGAAAGGAGTGTGCGCTTTGGAATTTTCAGAAGACTGGAAATCCTGTATATCTGCATATAAAGCAGACAAAGAAGTTAATTCCTGAAGACAGACCTTCAAAGAAACCCACCTTGTTGGCAATAGGTGTTGATGGTGGGTTTGATAACAACGAGGCGGAATATGAAGAAACTCATAGTATTGTCATATTACCTGATTTTGTATCTCTTCCGTTTCCCTCGGTGGAGTTACCCGAAAAGGTGAGGATGGCCGTCAATGCTATCCTTTTGGCTGAAGGTGCAGAGCGGAAAGAGCAGGTTGCATCTTGGGTTGCAGATAAGAAACAGACCAGTACTTATGCATTGAAATTAAAGCAAATTAACAATGGTGTTGTTGTTCCTCCAACTGGCTGGAAATGTGCTAAATGTGAGAAAAATGAGAATCTTTGGCTTAATCTGACTGATGGAATGATTCTTTGTGGGAGAAAAAATTGGGATGGAAGCGGTGGTAACAACCATGCTATTGAACACTACAAAGAGACTGGCTATCCTCTTGCTGTGAAGCTCGGGACAATTACAGCTGATCTCGAAGCTGCAGATGTTTTTTCTTATCCCGAGGATGACAGTGTACTGGATCCTCATCTGGCACAACATTTAGCTTTTTTCGGCATCGATTTCTCATCACTACAGAAGACTGAAATGACAACTGCTGAAAGAGAGCTTGATCAAAACACCAATTTTGACTGGAACCGGCTCCAAGAAAGTGGTCAGGAAGTTGAACCAATTTTTGGGCCAGGTTATACCGGTCTTGTCAATCTTGGAAATAGTTGTTACATGGCGGCAACTATCCAAGCTGTATTTTCAACAAAATCCTTCTGTTCAAGGTACTACATGAATCAAAGTTTGAAGGCGGCATTTGAAATGGCTCCTTCTGATCCTACTGTAGACCTGAATATGCAATTGACAAAACTTGCACATGGTTTGCTATCTGGAAAATATTCTGTTCCTGCACTTGACAAACAGGAAGGGATACCCCCAAGGATGTTCAAAGCGGTTATTGCTGCAAGCCATCCTGAGTTTTCATCGATGAGACAACAGGATGCATTGGAGTTTTTCCTTCATTTTCTTGACCAAGTTGAACGAGCTAATGCTGGGAAACCTGAGTTGGATCCTGCTAAGTGTTTCAAGTTTGGTATTGAAGAACGAATCCAATGTTCATCAGGAAAAGTTAAATATAATGGAAGGCATGACTATATTCTGTCTCTTAATATCCCACTTCAGGAAGCTACAAATAAAGAAGAACTAGCAGCTTTTCAAAAATTGAAAGCAGAAAAGCTTGCTGATGGGAAGGAAGTGTCCAGTGATAAAATTGAACGTCCTAGGGTTCCTCTTGAAGCTTGCCTTGCAAACTTTTCAGCTCCAGAAGAGATTCATGATTTTTATAGTACTGCCTTGAATGCTAAGACAACGGCACTCAAGTCAGCAGGTCTAACTTCATTCCCTGATTATCTTGTTCTGCACATGCGGAAATTTGTCATGGAAGTGGGTTGGGTGCCAAAGAAGCTCGATGTTTATATTGACGTTCCTGATATAATCGATATCAGTCACTTGCATAGTAAAGGTTGCCAACCTGGAGAGGAGCTATTACCTGATGCCCCAGATGGTGAGACAGGATCCAGCACACCTTTAGCTGATGAAAATATTGTCGTGCAGCTAGAATCAATGGGATTTAATCATTTTCGTTGTCAAAAGGCTGCAATAAAAACCTCAAATGTTGGAGTTGAAGAGGCCATGAACTGGCTTCTTTCTCACATGGACGATCCAGATATTGATGTTCCTATTTCTCAAGAAGCACATGGTGGACAAGAATTCTCGAGCATTGACCAATCAAAAGTTGATACTCTGATTTCCTTCGGATTTCAAGAAGACTTGGCGAGGAAGGCTCTGAAGGCTTCGGGTGGTGACATCGAGAAAGCAACAGAGTTGATATTTAACGATCCCAGTGCGTTTGCTTCATCTGGCGTGGATACCACCGAATCAAACAGTACACTTGCTCAAGATGATACTCCGTTACATGATGGAGGAGGGAGGTACAAACTCATGGGAATTGTCAGCCATATGGGAACATCTACTCAATGTGGTCACTATGTTTCTCACATCTTGAAAGATGGTAGGTGGGTCATCTTCAACGACAACAAGGTCGGGGCATCGGTTAATCCCCCCAAGGACATGGGGTATCTCTACTTCTTTGAGAGGCTGGATAGTTGA 2400 0.4246 MVEPIELLRSNLSRVRIPEPTNRIFKEECCLTFDTPRSEGGLFIDMYTFLAFGKECALWNFQKTGNPVYLHIKQTKKLIPEDRPSKKPTLLAIGVDGGFDNNEAEYEETHSIVILPDFVSLPFPSVELPEKVRMAVNAILLAEGAERKEQVASWVADKKQTSTYALKLKQINNGVVVPPTGWKCAKCEKNENLWLNLTDGMILCGRKNWDGSGGNNHAIEHYKETGYPLAVKLGTITADLEAADVFSYPEDDSVLDPHLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRLQESGQEVEPIFGPGYTGLVNLGNSCYMAATIQAVFSTKSFCSRYYMNQSLKAAFEMAPSDPTVDLNMQLTKLAHGLLSGKYSVPALDKQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFLDQVERANAGKPELDPAKCFKFGIEERIQCSSGKVKYNGRHDYILSLNIPLQEATNKEELAAFQKLKAEKLADGKEVSSDKIERPRVPLEACLANFSAPEEIHDFYSTALNAKTTALKSAGLTSFPDYLVLHMRKFVMEVGWVPKKLDVYIDVPDIIDISHLHSKGCQPGEELLPDAPDGETGSSTPLADENIVVQLESMGFNHFRCQKAAIKTSNVGVEEAMNWLLSHMDDPDIDVPISQEAHGGQEFSSIDQSKVDTLISFGFQEDLARKALKASGGDIEKATELIFNDPSAFASSGVDTTESNSTLAQDDTPLHDGGGRYKLMGIVSHMGTSTQCGHYVSHILKDGRWVIFNDNKVGASVNPPKDMGYLYFFERLDS* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00690 799 FunFam Ubiquitin carboxyl-terminal hydrolase 649 714 - -
Pte6g00690 799 FunFam Ubiquitin carboxyl-terminal hydrolase 305 614 - -
Pte6g00690 799 SUPERFAMILY UBA-like 665 713 IPR009060 GO:0005515
Pte6g00690 799 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 109 796 - -
Pte6g00690 799 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 257 IPR013083 -
Pte6g00690 799 Gene3D Cysteine proteinases 305 798 - -
Pte6g00690 799 Gene3D - 606 642 - -
Pte6g00690 799 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 742 760 IPR018200 GO:0004843|GO:0006511
Pte6g00690 799 FunFam Ubiquitin carboxyl-terminal hydrolase 148 257 - -
Pte6g00690 799 FunFam Ubiquitin carboxyl-terminal hydrolase 5 102 - -
Pte6g00690 799 Gene3D - 643 714 - -
Pte6g00690 799 SMART uba_6 672 709 IPR015940 -
Pte6g00690 799 SMART uba_6 609 647 IPR015940 -
Pte6g00690 799 Pfam Ubiquitin carboxyl-terminal hydrolase 312 794 IPR001394 GO:0004843|GO:0016579
Pte6g00690 799 CDD Peptidase_C19B 313 795 - -
Pte6g00690 799 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 670 710 IPR015940 -
Pte6g00690 799 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 312 797 IPR028889 -
Pte6g00690 799 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 112 IPR013083 -
Pte6g00690 799 Pfam UBA/TS-N domain 671 707 IPR015940 -
Pte6g00690 799 FunFam Ubiquitin carboxyl-terminal hydrolase 606 648 - -
Pte6g00690 799 Pfam Variant UBP zinc finger 15 77 IPR041432 -
Pte6g00690 799 SUPERFAMILY Cysteine proteinases 308 798 IPR038765 -
Pte6g00690 799 PIRSF UBP 6 798 IPR016652 GO:0004843|GO:0016579
Pte6g00690 799 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 313 328 IPR018200 GO:0004843|GO:0006511
Pte6g00690 799 Pfam Zn-finger in ubiquitin-hydrolases and other protein 184 258 IPR001607 GO:0008270
Pte6g00690 799 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 607 648 IPR015940 -
Pte6g00690 799 SMART Zf_UBP_1 183 238 IPR001607 GO:0008270
Pte6g00690 799 SUPERFAMILY RING/U-box 161 270 - -
Pte6g00690 799 ProSiteProfiles Zinc finger UBP-type profile. 160 270 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00690 Pte-Chr6 11475840 11485642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00690 605 655 C2H2 Transcription Factor Family AT1G04850 41.176 5.27e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00690 K11836 - cpap:110820639 1333.55