Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00687 ATGTTGACAGTAACTCCATCTACTTCGTCCTCAACTATCCAATGGCCAAGCGACTTGGAATTGGAATTGGAGCCATACTTTGAAAATTTTGAGCCTTGTGCTCATCTCTTCTCCGCTGATGCACAGTTCGATCAGCAAGAAGGCAACCCTACAGATCCCTCGGGAAATGTCGTCGTCGTCGAAAGGAAACTTAACCACAATGCTAATGAGCGTCACCGACGGCGGAAGATCAGCACCTTGTATACCTCTCTCCGGTCACTACTTCCTGACGTAGATCACAAGATAAAATTAAGCATGCCAGCTACAATTTCTTATGCTCTAGATTACATACCAAAGCTACGAAAGCAAATAGAGGAGCTGAGTGAGAAGAAGGAAGATCTATTACGCAGAGTTTCCAAGTCAATGGAATACACGAACCAAAAGAAGTGGAAGAAGTCTTATACATGCATGCGCAGGAGCTCACCATTCGTTCTGTCACTTAGTCAGCTGAATGAACAAGAACTTGTGATTCAAATATCCACTGATAAACTGCATGGGAATCTTCTTTCAGAGATCTTGGCCATATTAGAAACAGAAGCAGATAGAATTCAACTGCATAATGCATCTACCTTTGAGCACTCGGGAGACAAAGTCTTACATACCCTCCATTTTCAGGTAGGAAGAAATTACAGCGAGCAGCAACTCGAAGCTCTGAAGGAGAAGCTTCAATCATATATGAATTATGGGTATGTCATGCTTTCTCGGAGCTCCAACCCGAGAAAGCCTTCTCCGTTCCGTGTGCCCTCGCTTCGGCTACTCTTAAGCCATTCATGGCGTCGCTCTGGAATTTCCTTTCTCTGCTGTTCTCTTATGTATTTGTCTCGGGATGGTTTTCTGTTTGGTGAGTCGGCCATGAGTGCCTTGACTCCTTCGGTCATGGCGTCTGCCTGCTTGACAGGGGTGGAGAACATATCGGCTCGGGCTAAGGGGGATGGGCTAGTGGTTGACGACTTGGTGAGGTGA 1002 0.4591 MLTVTPSTSSSTIQWPSDLELELEPYFENFEPCAHLFSADAQFDQQEGNPTDPSGNVVVVERKLNHNANERHRRRKISTLYTSLRSLLPDVDHKIKLSMPATISYALDYIPKLRKQIEELSEKKEDLLRRVSKSMEYTNQKKWKKSYTCMRRSSPFVLSLSQLNEQELVIQISTDKLHGNLLSEILAILETEADRIQLHNASTFEHSGDKVLHTLHFQVGRNYSEQQLEALKEKLQSYMNYGYVMLSRSSNPRKPSPFRVPSLRLLLSHSWRRSGISFLCCSLMYLSRDGFLFGESAMSALTPSVMASACLTGVENISARAKGDGLVVDDLVR* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00687 333 CDD bHLH_AtORG2_like 62 134 - -
Pte6g00687 333 SMART finulus 67 119 IPR011598 GO:0046983
Pte6g00687 333 Pfam Helix-loop-helix DNA-binding domain 62 113 IPR011598 GO:0046983
Pte6g00687 333 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 59 237 - -
Pte6g00687 333 FunFam Transcription factor ORG2 57 142 - -
Pte6g00687 333 Coils Coil 110 130 - -
Pte6g00687 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 54 127 IPR036638 GO:0046983
Pte6g00687 333 Gene3D - 59 144 IPR036638 GO:0046983
Pte6g00687 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 113 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00687 Pte-Chr6 11452043 11453962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00687 47 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 40.113 5.33e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte6g00687 HLH 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00687 - - vvi:100262373 155.221