Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00685 ATGGGTTGCTTCTGTTGCAAGCCCTCTTCTATTGAGGATAGCAAAGATAGTCCAAGGGAGCGACCATCTAGTAGAGGTTTCTTAGACTCACGGATACACAGAGTTAATACATCAAGGAGGGAGGAGCCCCATAGAGCTAAGGATCAATTTGAGGGTAATGGTGGCACAGCTGCATTGATTGATAAACAGGGAAATGGTTCTGTTCGGTTACATGGTGAGCATTTTGATATGAAGAGGGAGAAGATGGAGCTCATTGTTGCTCACCATCCAGGAGCTGGGACGATTCCAAAAGCCATTGCAGGGGAGCATATTGCCGCAGGGTGGCCCTCATGGCTGGCTGCGGTGGCTGGGGAGGCTATCCAGGGTTGGTTACCACGACGGGCTGATTCTTTTGAGAAACTGGATAAGATTGGCCAGGGAACATACAGTAATGTCTACCGGGCTCGCGATCTGGAGCAAAAGAAAATCGTTGCTTTGAAGAAAGTAAGGTTTGATAACTTAGAGCCTGAGAGTGTGCGCTTTATGGCGAGGGAAATACACATTCTGCGCAAACTCAACCATCCCAATGTGATAAAACTTGAAGGTCTTGTTACATCAAGAATGTCTTGCAGCTTGTACCTTGTTTTTGAGTACATGGAACATGACTTGGCTGGGCTTGCTTCATACCCTAGAGTAAAGTTTACTGAAGCACAGGTTAAGTGTTACATGCAGCAACTTCTGCGTGGACTTGATCATTGTCATACTCGCGGCGTTCTCCATCGTGATATTAAGGGTTCTAACCTCTTGATTGATGACAATGGGATTTTGAAGATTGCAGACTTTGGTCTAGCAAGTTCTTTTGATCCCCTACAAAGGCAACCATTAACTAGTCGGGTGGTGACCCTTTGGTACCGTCCACCGGAGCTTTTGCTTGGAGCCACTAATTATGGGACTGCTGTAGATTTGTGGAGTACAGGTTGCATTCTTACTGAGTTGTATACTGGAAAGCCTATTATGCCTGGAAGAACTGAGGTGGAGCAGTTACATAAAATTTTTAAACTCTGTGGTTCCCCTTCAGAGGATTACTGGAGAAAATCTAAGTTGCCTCACGCTACTATCTTTAAGCCTCAACAGCCATATAGACGGTGTATTGCAGAAACATTTAAGGAACTCCCTACACCAGCATTAGATCTTGTGAACATTTTACTTTCCATAGACCCTGCTGATCGTGGGACTGCAGCTTCTGCTCTGGATAATGAGTTCTTCACAACGAAACCATTTCCATGTGATCCTGCAAGCTTACCTAAGTATCCTCCTAGCAAAGAGCTTGATGCAAAAGTACGAGATGAAGAGGCTAGAAGACAATGTGCAGTAGGAAGCAGGGGCCAAAAAGTAGACCCTGACAAAAGAGGAGCAAAGGAGTCTCGAGCAATCCCAGCACCGGATGCTAATGCTGAACTAATGCTGTCAATGCAGAAGAGGCAAGGTCATGCTAATTCTAAGAGCCGCAGTGAGAAGTTTAATCCTCATCCTGAAGATGCTGCTTCAGGATTTCCAATTGATCCACCTAGGCATTCACAAACTGCAGAAGTGGGTGGAGATCCCCAAGTACAGCACCATAAAAGAGCCTCCCACTCTGGGCCACTTGTTCACCGCACTGCTTGGGCAAAATCAGTGAAGAACCAGGATGACGCTCCCAAGGTTTCTATGGGCGCTGACTTGTCTACAATGCCAGGTTTCGTTGCAGCCAGGAGTAGTGCTTTATGTGAAGACAGAAGAAACAGGTCCGGTTCCTCTCAATTAGAAGTTCCAAAGCTAATAGGCAGGTTCCCTGGATCCTTCAAAGGCTCTGAACAATTGCTACCACCAGCTTCAAAGCATCTTACACAGGGTTTTGTGAGTTTTAACCAAAAGGAAGATGGGAGAAGTGGCAACAAAGATTCATCTCTGGTTGGTTATGGCTCCAAGGTCCATCAGATACATTACTCTGGTCCATTGTTAGTTTCAGGCAACATGGACCAGATGTTGAAGGATCATGACCACCATATTCAAGAAGCTGAGAGACGAGCACGACTTGACAAGGCAAAGGTAAGAAAACTTCAGGCGGAAGGGAACCGAATAACTACCAATTCATTAATCGTATCTGGCCGGTAA 2133 0.458 MGCFCCKPSSIEDSKDSPRERPSSRGFLDSRIHRVNTSRREEPHRAKDQFEGNGGTAALIDKQGNGSVRLHGEHFDMKREKMELIVAHHPGAGTIPKAIAGEHIAAGWPSWLAAVAGEAIQGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQKKIVALKKVRFDNLEPESVRFMAREIHILRKLNHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASYPRVKFTEAQVKCYMQQLLRGLDHCHTRGVLHRDIKGSNLLIDDNGILKIADFGLASSFDPLQRQPLTSRVVTLWYRPPELLLGATNYGTAVDLWSTGCILTELYTGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCIAETFKELPTPALDLVNILLSIDPADRGTAASALDNEFFTTKPFPCDPASLPKYPPSKELDAKVRDEEARRQCAVGSRGQKVDPDKRGAKESRAIPAPDANAELMLSMQKRQGHANSKSRSEKFNPHPEDAASGFPIDPPRHSQTAEVGGDPQVQHHKRASHSGPLVHRTAWAKSVKNQDDAPKVSMGADLSTMPGFVAARSSALCEDRRNRSGSSQLEVPKLIGRFPGSFKGSEQLLPPASKHLTQGFVSFNQKEDGRSGNKDSSLVGYGSKVHQIHYSGPLLVSGNMDQMLKDHDHHIQEAERRARLDKAKVRKLQAEGNRITTNSLIVSGR* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00685 710 Coils Coil 676 696 - -
Pte6g00685 710 MobiDBLite consensus disorder prediction 425 541 - -
Pte6g00685 710 CDD STKc_CDK9_like 131 415 - -
Pte6g00685 710 FunFam probable serine/threonine-protein kinase At1g54610 214 455 - -
Pte6g00685 710 PANTHER CELL DIVISION PROTEIN KINASE 129 421 - -
Pte6g00685 710 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Pte6g00685 710 FunFam probable serine/threonine-protein kinase At1g54610 118 213 - -
Pte6g00685 710 SUPERFAMILY Protein kinase-like (PK-like) 125 423 IPR011009 -
Pte6g00685 710 Gene3D Transferase(Phosphotransferase) domain 1 214 454 - -
Pte6g00685 710 MobiDBLite consensus disorder prediction 12 49 - -
Pte6g00685 710 MobiDBLite consensus disorder prediction 434 469 - -
Pte6g00685 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Pte6g00685 710 MobiDBLite consensus disorder prediction 8 61 - -
Pte6g00685 710 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g00685 710 SMART serkin_6 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g00685 710 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g00685 710 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00685 Pte-Chr6 11408710 11414554 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00685 123 454 Core Cell Cycle Gene Families AT5G10270 51.724 1.39e-114 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pte6g00685 Pkinase 1.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00685 - - pvy:116107610 1128.24