Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00682 ATGGAAGGTAGGAGCTGGCCGTGGAAGAAGAAATCATCATATGAGACTTCTGTCGAGAAAGCTGTTGCAGCTTCAGAGTCTAAAGGTGCTTCTGCAGAGGTCAATCAGATGCATACACAAGTTTTAGATGCAAGAGACATTAATGAAACAGCTCCCACTGGGAAGCGTCCTAGAGACGAAGAAACCTTTGCGTTTCCCGCAAAGCTTAATGGAGTTGTCTCGCAACGGAGTGGACAATGGGCTGCAGAAATTTATGTTAACAATCATATGATTTGGCTAGGGACGTTTGGTTCAGAGGAGGAAGCTGCAACGGCATATGACAGTGCAACAATCAAAATTCAAAGTGGAGAATTTCAAAGAAACTTTCCATGGACTGAACCAAAATCTCAAGAGCCATGTGAGACCAAATGCAATGAGGAGGCTTTATTCAACATGATAAGAGATGGATCATCTCAATCCAAATTCTCTTATTTTCTCTGGCTTCAAACCCAGAATGGGAAAATACAACAGGGACATAATCTCACAGCCAAGGATAGAAATGTAAATGGAAAGTTCAAGTGTAGGCATCTATTTCACAAAGTGCTGACACCAAGTGATGTCGGCAAGTTAAACAGACTTGTCATACCCATAAAATATGCTTTAAAATATTTCCATTGCTGA 660 0.4121 MEGRSWPWKKKSSYETSVEKAVAASESKGASAEVNQMHTQVLDARDINETAPTGKRPRDEETFAFPAKLNGVVSQRSGQWAAEIYVNNHMIWLGTFGSEEEAATAYDSATIKIQSGEFQRNFPWTEPKSQEPCETKCNEEALFNMIRDGSSQSKFSYFLWLQTQNGKIQQGHNLTAKDRNVNGKFKCRHLFHKVLTPSDVGKLNRLVIPIKYALKYFHC* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00682 219 MobiDBLite consensus disorder prediction 23 60 - -
Pte6g00682 219 SUPERFAMILY DNA-binding domain 69 124 IPR016177 GO:0003677
Pte6g00682 219 SMART rav1_2 68 129 IPR001471 GO:0003700|GO:0006355
Pte6g00682 219 MobiDBLite consensus disorder prediction 29 43 - -
Pte6g00682 219 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 68 217 IPR044800 GO:0003700
Pte6g00682 219 Gene3D - 179 219 IPR015300 -
Pte6g00682 219 CDD AP2 71 125 IPR001471 GO:0003700|GO:0006355
Pte6g00682 219 Gene3D AP2/ERF domain 68 124 IPR036955 GO:0003700|GO:0006355
Pte6g00682 219 ProSiteProfiles AP2/ERF domain profile. 68 123 IPR001471 GO:0003700|GO:0006355
Pte6g00682 219 SUPERFAMILY DNA-binding pseudobarrel domain 189 217 IPR015300 -
Pte6g00682 219 Pfam AP2 domain 73 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00682 Pte-Chr6 11360953 11363609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00682 56 216 RAV Transcription Factor Family AT1G51120 46.629 2.32e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte6g00682 AP2 4.8e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00682 K09287 - rcu:8266288 169.088