Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00678 ATGAACGGGAAGGCCAACGTTTCCAAAGAGCTTAACGCAAAGCACAGAAAGATACTTGAAGAGCTCTTGAAACAACCAGAGAATAGGGAATGTGCTGATTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTAAATCTTGGGATCTTTATATGCATGCAGTGTTCAGGTATCCACAGGAGTCTTGGAGTTCACATATCGAAGGTGCGGTCTGCTACCCTGGACACTTGGCTACCAGAACAGGTTACATTCATCCAAGCAATGGGAAATGAGAAAGCAAATGCTTTCTGGGAAGCTGAGCTACCACCCAATTATGATAGAGTTGGAATAGAGAATTTTATCCGCGCAAAGTATGAGGACAAGCGATGGGTTCCAAAGGACGGGAAATCAACATCACCTTCTAGATTGCAGGAGGAAAGAACTTCTGGAGATTGGCAGAGGCCTGGCGATAGAAGCTGGCATAGCCATGCATCTGCTTCTGATAATGCATGTGAAGCGAGGACGAGTAACCAGATATCAAGTACAACCCCTACAAGAATTAGTGTCCCAGTTCCTCCTAAAGGACCTGAGCAGGTGACACCTGTCCAAAAGCCTCAGCATTCTGGGAAAGTTGAACAGCCAATGCTACAGTCAAATGCAACCAAATCTGCTTCAGATGCTGCTCCTACCCCCAGAGTTGATTTTGCTACAGACCTTTTCAATATGTTATCAATGGATGGTCCAAGTGAAAATGGTTCTGGGACTGCATCTACTGATGATAATGATGATAATACCTGGGCAGGTTTCCAGTCTGCTCAAGCAACAACAACTGCTGGGAAAACTGGCTCTACAAAAACGGCCACTCAAAGTCCGCAGTCCATATCAAGTACTGAAGATCTATTCAAAGATTCAACTTCAGCAATGCCCGCTACAGTGTCAGGAAAACCTCAGAAAGATGTTAAAAATGATATCTTGAGTCTTTTTGAGAAGTCTAGTATGGTTTCTCCATATTCCACGCATCAGCAGCAGGTAGCCATGCTCGCACAGCAGCAGACCCTTCTCATGGCTGCTGCTGCTGCTAAATCTACAGAATCAAACCCAAAATATCCTGTTGCTATTCAACAACCAGCTCTGAATGATGCGAACACTCACATTCAAAGGTGGCCACACACTGGCTACCAGGTTCCTGGAATGATGATGCCAATAGGAGGACAGGGTGACATGCAGAAGCTTATGCAGGTGAGGAACATTGCTCCAGCTTATCCAGCTGTCACCACTGGTCCATATCCGACACCCAGTTACCATGCAGTAGGTCAAGTTAACCCTGTTAATGGCGCAGCGATGCCTGGAACAAGTAAACCGCAATCCGCAGCTCCAATGTCATCAATGCCTTCTCAGACAGGAAAAGATTATGATTTCTCTTCTTTAACTCTTGGGATGTTCACGAAGCACTAA 1431 0.4556 MNGKANVSKELNAKHRKILEELLKQPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVTFIQAMGNEKANAFWEAELPPNYDRVGIENFIRAKYEDKRWVPKDGKSTSPSRLQEERTSGDWQRPGDRSWHSHASASDNACEARTSNQISSTTPTRISVPVPPKGPEQVTPVQKPQHSGKVEQPMLQSNATKSASDAAPTPRVDFATDLFNMLSMDGPSENGSGTASTDDNDDNTWAGFQSAQATTTAGKTGSTKTATQSPQSISSTEDLFKDSTSAMPATVSGKPQKDVKNDILSLFEKSSMVSPYSTHQQQVAMLAQQQTLLMAAAAAKSTESNPKYPVAIQQPALNDANTHIQRWPHTGYQVPGMMMPIGGQGDMQKLMQVRNIAPAYPAVTTGPYPTPSYHAVGQVNPVNGAAMPGTSKPQSAAPMSSMPSQTGKDYDFSSLTLGMFTKH* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00678 476 CDD ArfGap 19 117 - -
Pte6g00678 476 MobiDBLite consensus disorder prediction 234 292 - -
Pte6g00678 476 MobiDBLite consensus disorder prediction 123 150 - -
Pte6g00678 476 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Pte6g00678 476 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Pte6g00678 476 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Pte6g00678 476 SUPERFAMILY ArfGap/RecO-like zinc finger 15 125 IPR037278 -
Pte6g00678 476 MobiDBLite consensus disorder prediction 123 222 - -
Pte6g00678 476 MobiDBLite consensus disorder prediction 152 180 - -
Pte6g00678 476 Pfam Putative GTPase activating protein for Arf 17 124 IPR001164 GO:0005096
Pte6g00678 476 MobiDBLite consensus disorder prediction 438 460 - -
Pte6g00678 476 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Pte6g00678 476 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Pte6g00678 476 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Pte6g00678 476 MobiDBLite consensus disorder prediction 193 218 - -
Pte6g00678 476 MobiDBLite consensus disorder prediction 236 292 - -
Pte6g00678 476 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 476 IPR044520 GO:0005096
Pte6g00678 476 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00678 Pte-Chr6 11293928 11299270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00678 2 131 C2H2 Transcription Factor Family AT4G05330 45.652 2.91e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00678 K12486 - cave:132175050 585.489