Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00663 ATGGATTCAAGCTGTCTGGAAGTCGCTAGCTGTTCTGATCAAGAATGTGGAAGAGGCGTTCATTTCAGAAACAGATCAAAATACATTTCAGAGCAGACATTCTCTGACAGTGAAGGTGGCTGCTTTCAATGCAATATTTGCTTAGAATCAGCATATGATCCTATCATTACGCTCTGCGGGCATCTTTATTGCTGGCCCTGCATTTACAAGTGGCTCCATGTTCATAGCTCTCATGAGGAAGGCCGCTCAGACCAGTCCCAGAAATGTCCTGTTTGTGAGGCTAAAATTTCTAGTGCCTCACTTGTGCCCCTTTATGGCAGTGGAGCATCAAAATCAAACTCTGAAGTTAAGAAACCCCATTCGGATCCAGTTGTTCCTCGTAGACCATCTTTAATCACGGCATCTGCTTCTCGTTCAAGTCGGCATCTTCATCGGAATTATATTCAATCACAACCACACTTGGTTCACCACCAGCGCTATTTCCCTGAAGTTTATAGAGATCTTTCAGCAACACCACCTTTACGTAGTGGCAGTGCAGTGACTAGTTTGCTTTTAAATCCAACAATTGGCGCGTTTGGGGAGATGATATTTTCGAGAATCTTTGGGAGCACAGATGGAACTTTGTTTCCTCAAAATTCAAACTTTCACCCTCCTATTGGAAATAGCAATCCTAGAATTAGAAGGCAGGAGCTGAGGCTTGAGAAATCTCTTACCAGAATATCATTTTTTCTATTTTGTTGTGTAGTTTTATGTCTTCTACTGTTCTAG 768 0.4232 MDSSCLEVASCSDQECGRGVHFRNRSKYISEQTFSDSEGGCFQCNICLESAYDPIITLCGHLYCWPCIYKWLHVHSSHEEGRSDQSQKCPVCEAKISSASLVPLYGSGASKSNSEVKKPHSDPVVPRRPSLITASASRSSRHLHRNYIQSQPHLVHHQRYFPEVYRDLSATPPLRSGSAVTSLLLNPTIGAFGEMIFSRIFGSTDGTLFPQNSNFHPPIGNSNPRIRRQELRLEKSLTRISFFLFCCVVLCLLLF* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00663 255 ProSiteProfiles Zinc finger RING-type profile. 44 93 IPR001841 -
Pte6g00663 255 ProSitePatterns Zinc finger RING-type signature. 59 68 IPR017907 -
Pte6g00663 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 106 IPR013083 -
Pte6g00663 255 MobiDBLite consensus disorder prediction 109 128 - -
Pte6g00663 255 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 30 252 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pte6g00663 255 SMART ring_2 44 92 IPR001841 -
Pte6g00663 255 Pfam RING-type zinc-finger 44 90 IPR027370 -
Pte6g00663 255 SUPERFAMILY RING/U-box 40 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00663 Pte-Chr6 10969999 10972428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00663 37 241 C3H Transcription Factor Family AT4G27470 38.605 7.71e-42 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00663 K10666 - csv:101206686 233.802