Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00632 ATGGATTTAAAAAATCTTGAGAGGAGGAGATCTACAAAGGAGAAAATGATCAAGGATAGCCTGGTCGATGAACAAGATAATGACTTGGAGGAAGAGGAGGAGTTTGGTGGTGAGAACCTTGATGAAGACAAGAAGAAATCAGTAGGAGGATATGGCAGGAGAGGAGGGTCCAATTCTTGTGGAGCTTCCCCACCTTCTTGTCAAGCTGAAAGATGTGGAGCTAGTATGACTGATGCAAAAAGGTACCATCGTCGACATAAAGTCTGCGAGTTTCATTCCAAGGCATCTGTTGTTATGGTTTCAGGCCTAAGACAGAGGTTTTGCCAGCAATGTAGCAGGTTCCACGAGATAACTGAGTTTGATGAATCAAAAAGAAGCTGCCGCAGGCGGTTGGCTGGACACAATGAGCGTCGCCGCAAAAGTCCGGCCGAGACAACTGTTGGCGTCCTGTCCAATGAGATATCAAGCAACGTTCATGCTGTTGGTCAACAATCCAAGGACAGTCATTTCAGGCTAGCTGATGGAAGAGGCAGAATCCACAATAGCAACCCGGGAGCTTCCACTTACAAATCGTTCAATAGGCATAACTAA 591 0.4602 MDLKNLERRRSTKEKMIKDSLVDEQDNDLEEEEEFGGENLDEDKKKSVGGYGRRGGSNSCGASPPSCQAERCGASMTDAKRYHRRHKVCEFHSKASVVMVSGLRQRFCQQCSRFHEITEFDESKRSCRRRLAGHNERRRKSPAETTVGVLSNEISSNVHAVGQQSKDSHFRLADGRGRIHNSNPGASTYKSFNRHN* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00632 196 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
Pte6g00632 196 Gene3D - 62 128 IPR036893 GO:0003677|GO:0005634
Pte6g00632 196 Pfam SBP domain 67 140 IPR004333 GO:0003677
Pte6g00632 196 MobiDBLite consensus disorder prediction 1 23 - -
Pte6g00632 196 MobiDBLite consensus disorder prediction 174 196 - -
Pte6g00632 196 MobiDBLite consensus disorder prediction 24 38 - -
Pte6g00632 196 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 46 155 IPR044817 GO:0003677
Pte6g00632 196 MobiDBLite consensus disorder prediction 1 67 - -
Pte6g00632 196 MobiDBLite consensus disorder prediction 181 196 - -
Pte6g00632 196 SUPERFAMILY SBT domain 65 145 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00632 Pte-Chr6 9994901 9996414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00632 56 172 SBP-box Gene Family AT1G53160 60.684 1.93e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte6g00632 SBP 1.1e-30 No_clan