Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00628 ATGAAAATGGCTCCGAAGGAAAGACTCAGTTCCTTCAACGGATCGAACCCTGAGCCCAAAAGCAAGGAAATCAGATACAGAGGTGTGAGGAAGCGTCCTTGGGGTAGATATGCTGCTGAGATCCGAGACCCAGGGAAGAAGACACGTGTCTGGCTGGGTACGTTTGACACTGCCGAGGAGGCGGCGCGTGCTTATGACGCGGCTGCACGTGAGTTCCGTGGAACTAAGGCCAAGACGAATTTTCCTACGACATCGGAACTCGCCGTGAAAAGCAACCACAACTTTGTGCGCAGTCCTAGCCAGAGCAGCACCCTTGATACATCCTCTCCACCTCCACCACCGTTAGACCTAACTCTTGGGCCACTCTCCGCCGCTGGCACTTTTGATTTCCCCGTAGTTCCTGTAGCTCGCCCTGTTGTTTACTTTGACGTCTTCGCTCGTACTGAGCCATTTGTGGTGCGTCGTGATTTGTGCCCTCGCCATGCGACAGATTTCCATCAAGTCATCGGAAGTGTCAGAACTGCTGGTGGTGGGGGTGGTGTTCAGAGCGAATCTGATTCTTCGTCAGTGGTTGATTACGATCTTGTGTCGCGCAAGAGACTGGTAGATCTTGACCTGAATTTTCCTCCTCGACCTGAGGTTGCTTGA 648 0.5293 MKMAPKERLSSFNGSNPEPKSKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGTKAKTNFPTTSELAVKSNHNFVRSPSQSSTLDTSSPPPPPLDLTLGPLSAAGTFDFPVVPVARPVVYFDVFARTEPFVVRRDLCPRHATDFHQVIGSVRTAGGGGGVQSESDSSSVVDYDLVSRKRLVDLDLNFPPRPEVA* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00628 215 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Pte6g00628 215 Gene3D AP2/ERF domain 24 84 IPR036955 GO:0003700|GO:0006355
Pte6g00628 215 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Pte6g00628 215 MobiDBLite consensus disorder prediction 91 105 - -
Pte6g00628 215 MobiDBLite consensus disorder prediction 1 27 - -
Pte6g00628 215 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Pte6g00628 215 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Pte6g00628 215 FunFam Ethylene-responsive transcription factor 2 25 83 - -
Pte6g00628 215 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Pte6g00628 215 MobiDBLite consensus disorder prediction 91 114 - -
Pte6g00628 215 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Pte6g00628 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 160 - -
Pte6g00628 215 CDD AP2 25 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00628 Pte-Chr6 9837411 9838749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00628 21 146 AP2-EREBP Transcription Factor Family AT3G15210 62.590 1.02e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte6g00628 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00628 K09286 - qsa:O6P43_029132 198.749